# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.02e-33 c.107.1.1 68027 1i74A 309 9.57e-32 c.107.1.1 61867 2eb0A 307 6.56e-26 1wpnA 188 2.54e-22 c.107.1.1 114826 1ir6A 424 1.29e-11 c.107.1.2 71342 2qb7A 397 2.26e-09 1yt8A 539 1.043 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1jpkA 388 3.329 c.1.22.1 67026 2djiA 590 3.889 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2q71A 356 4.555 1sviA 195 4.914 c.37.1.8 106048 2ez9A 603 5.023 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2p97A 201 7.364 2bjhA 260 7.650 1vmeA 410 7.930 c.23.5.1,d.157.1.3 108893,108894 2ejaA 338 8.322 1uwcA 261 8.469 c.69.1.17 100101 1zcjA 463 8.569 1tib 269 10.27 1r8eA 278 11.69 a.6.1.3,d.60.1.1 104843,104844 1poxA 585 14.50 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2q28A 564 16.02 1puiA 210 17.24 c.37.1.8 88292 1a81A 254 17.66 d.93.1.1,d.93.1.1 40507,40508 2oq1A 254 18.76 d.93.1.1,d.93.1.1 139220,139221 1v8bA 479 20.45 c.2.1.4,c.23.12.3 113564,113565 3bzwA 274 23.38 1lfwA 470 23.91 c.56.5.4,d.58.19.1 77942,77943 1gt6A 269 27.88 c.69.1.17 76342 2cyaA 364 28.49 2o35A 105 30.63 1eejA 216 34.17 c.47.1.9,d.17.3.1 33057,38071 1ra0A 430 35.61 b.92.1.2,c.1.9.5 111756,111757 2fv2A 268 39.25 1th8B 116 39.30 c.13.2.1 106909 1ybhA 590 39.53 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1fcjA 322 40.16 c.79.1.1 35289 1gm5A 780 41.59 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 3cogA 403 42.49 3brsA 289 43.41 1qwgA 251 45.22 c.1.27.1 96473 2c31A 568 46.61 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1uswA 260 48.37 c.69.1.17 99895 1d2mA 665 48.81 c.37.1.19,c.37.1.19 32417,32418 1gpjA 404 54.21 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1sxjA 511 56.09 a.80.1.1,c.37.1.20 106081,106082 1b4aA 149 56.30 a.4.5.3,d.74.2.1 16088,39721 2qe8A 343 58.13 3c3yA 237 58.46 1oasA 322 59.34 c.79.1.1 35293 1vjoA 393 59.94 c.67.1.3 100827 1aiaA 396 60.11 c.67.1.1 34306 2p5mA 83 61.38 8abpA 306 61.72 c.93.1.1 35647 1fohA 664 62.13 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1bn7A 294 64.21 c.69.1.8 34677 1rkuA 206 64.31 c.108.1.11 97627 1vmkA 277 67.59 c.56.2.1 113680 2cxxA 190 69.17 c.37.1.8 131013 1efaA 333 71.20 a.35.1.5,c.93.1.1 17106,35691 2bm8A 236 72.81 c.66.1.50 128771 2fz4A 237 73.36 c.37.1.19 134419 1b24A 188 77.83 d.95.2.1,d.95.2.1 40573,40574 1utgA 70 82.35 a.101.1.1 18813 2psdA 318 83.47 1tedA 393 84.48 c.95.1.2 106807 1oywA 523 85.30 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762