# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k20A	310	1.61e-26	c.107.1.1	68027
1i74A	309	1.08e-24	c.107.1.1	61867
2eb0A	307	1.45e-20		
1wpnA	188	9.12e-19	c.107.1.1	114826
1ir6A	424	8.90e-10	c.107.1.2	71342
2qb7A	397	2.79e-09		
3b9pA	297	3.428		
1xwiA	322	3.833		
1v8bA	479	4.526	c.2.1.4,c.23.12.3	113564,113565
1vjgA	218	7.640	c.23.10.6	100810
1vmeA	410	7.866	c.23.5.1,d.157.1.3	108893,108894
1iz7A	295	8.824	c.69.1.8	76982
1mj5A	302	9.98	c.69.1.8	91285
1p15A	253	11.45	c.45.1.2	93894
1sviA	195	11.90	c.37.1.8	106048
1xwfA	431	12.33	c.2.1.4,c.23.12.3	122392,122393
3c3yA	237	12.89		
1uwcA	261	13.06	c.69.1.17	100101
1cqwA	295	14.25	c.69.1.8	34679
2psdA	318	14.60		
1xqwA	293	16.92		
1jpkA	388	17.53	c.1.22.1	67026
2q71A	356	18.56		
8abpA	306	19.52	c.93.1.1	35647
1lfwA	470	21.11	c.56.5.4,d.58.19.1	77942,77943
1bn6A	294	21.39	c.69.1.8	34678
8abp	306	22.10		
2bjhA	260	23.22		
1uswA	260	23.57	c.69.1.17	99895
1lgyA	269	24.42	c.69.1.17	34758
3c5vA	316	26.13		
1u2pA	163	26.54		
1bn7A	294	26.98	c.69.1.8	34677
2oryA	346	27.79		
1d1qA	161	30.52	c.44.1.1	32642
2d5cA	263	32.86		
1tib	269	33.32		
1yt8A	539	35.62	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2gptA	523	40.07		
1mtzA	293	48.29	c.69.1.7	79467
1fztA	211	48.42	c.60.1.1	60158
2oq1A	254	49.19	d.93.1.1,d.93.1.1	139220,139221
2hhjA	267	50.68	c.60.1.1	136497
3brsA	289	54.57		
1cr6B	554	55.18	c.69.1.11,c.108.1.2	34688,43338
2og1A	286	56.28		
1x8hA	228	56.68	d.157.1.1	114961
2f9zC	159	57.54		
2ohhA	404	58.60		
1cv2A	296	59.77	c.69.1.8	34680
1a81A	254	61.92	d.93.1.1,d.93.1.1	40507,40508
1b6gA	310	62.83	c.69.1.8	34661
2e85A	159	64.62		
2bvwA	362	64.95	c.6.1.1	30666
2pujA	286	65.92		
1oc7A	364	66.30	c.6.1.1	86794
1u2eA	289	69.77		
1puiA	210	70.16	c.37.1.8	88292
1pv1A	299	70.47	c.69.1.34	111639
2btoA	473	70.55		
1fcjA	322	71.14	c.79.1.1	35289
2q28A	564	71.28		
2o2iA	300	71.39		
2bm8A	236	74.95	c.66.1.50	128771
1m2xA	223	75.49	d.157.1.1	84764
1gt6A	269	75.99	c.69.1.17	76342
2ooqA	286	77.33		
2c31A	568	77.49	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1lyvA	306	78.14	c.45.1.2	74348
1x8gA	227	79.44	d.157.1.1	114960
1bvwA	360	81.22	c.6.1.1	30668
2v03A	303	82.37		
1e58A	249	83.10	c.60.1.1	59262
1a8qA	274	83.24	c.69.1.12	34702
1xwwA	157	86.57		
3d64A	494	89.53		
2pocA	367	89.93