# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k20A	310	2.57e-28	c.107.1.1	68027
1i74A	309	8.88e-27	c.107.1.1	61867
2eb0A	307	7.65e-21		
1wpnA	188	1.20e-18	c.107.1.1	114826
1ir6A	424	1.02e-10	c.107.1.2	71342
2qb7A	397	2.16e-08		
2ez9A	603	0.3788	c.31.1.3,c.36.1.5,c.36.1.9	132627,132628,132629
1yt8A	539	1.955	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1poxA	585	2.018	c.31.1.3,c.36.1.5,c.36.1.9	31731,31793,31794
2djiA	590	2.087	c.31.1.3,c.36.1.5,c.36.1.9	131544,131545,131546
2oq1A	254	2.298	d.93.1.1,d.93.1.1	139220,139221
2uz1A	563	3.821		
2c31A	568	5.133	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1a81A	254	5.336	d.93.1.1,d.93.1.1	40507,40508
2q28A	564	5.882		
1ybhA	590	6.988	c.31.1.3,c.36.1.5,c.36.1.9	122891,122892,122893
8abpA	306	7.114	c.93.1.1	35647
2psdA	318	7.669		
1v8bA	479	8.291	c.2.1.4,c.23.12.3	113564,113565
1ozhA	566	11.03	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
1jpkA	388	13.01	c.1.22.1	67026
1xqwA	293	13.98		
8abp	306	14.15		
2ihtA	573	14.44		
1mj5A	302	17.28	c.69.1.8	91285
1iz7A	295	19.71	c.69.1.8	76982
2q71A	356	20.66		
2e85A	159	21.66		
1xwfA	431	22.49	c.2.1.4,c.23.12.3	122392,122393
2i3dA	249	24.01		
1ra0A	430	25.39	b.92.1.2,c.1.9.5	111756,111757
1vmeA	410	25.41	c.23.5.1,d.157.1.3	108893,108894
1cqwA	295	26.35	c.69.1.8	34679
1w5fA	353	27.14	c.32.1.1,d.79.2.1	114247,114248
1sxjA	511	28.13	a.80.1.1,c.37.1.20	106081,106082
1xwiA	322	28.34		
1mtzA	293	29.33	c.69.1.7	79467
1bn7A	294	29.61	c.69.1.8	34677
2p97A	201	30.02		
2o2iA	300	30.17		
1ceo	343	34.31		
1uwcA	261	34.37	c.69.1.17	100101
2bjhA	260	34.94		
1qpbA	563	39.82	c.31.1.3,c.36.1.5,c.36.1.9	31739,31781,31782
1bn6A	294	40.11	c.69.1.8	34678
3b9pA	297	42.48		
1uirA	314	43.57	c.66.1.17	99429
1lfwA	470	44.02	c.56.5.4,d.58.19.1	77942,77943
1ym5A	300	44.27		
1eejA	216	44.55	c.47.1.9,d.17.3.1	33057,38071
2nxwA	565	44.89		
1yx1A	264	45.30	c.1.15.7	124169
1r8eA	278	45.95	a.6.1.3,d.60.1.1	104843,104844
1r4wA	226	46.62	c.47.1.13	97050
2ejaA	338	51.47		
1yzxA	226	52.46		
1b8gA	429	55.00	c.67.1.4	34499
1oasA	322	55.03	c.79.1.1	35293
1qnoA	344	55.26	c.1.8.3	28838
1i12A	160	55.86	d.108.1.1	61515
1oc7A	364	58.13	c.6.1.1	86794
3d64A	494	59.43		
1p9eA	331	60.36	d.157.1.5	104088
2og1A	286	61.16		
1vjgA	218	61.60	c.23.10.6	100810
1h75A	81	64.71	c.47.1.1	60716
1cv2A	296	65.22	c.69.1.8	34680
2hufA	393	66.63		
3bchA	253	67.53		
3bwaA	276	70.99		
1akyA	220	73.44	c.37.1.1,g.41.2.1	31896,45197
1bplB	294	74.56	b.71.1.1	27716
2ei9A	240	79.72		
1gca	309	81.97		
3c5vA	316	85.00