# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1i74A 309 7.15e-14 c.107.1.1 61867 1k20A 310 2.86e-13 c.107.1.1 68027 1wpnA 188 4.26e-10 c.107.1.1 114826 2eb0A 307 3.30e-09 1ir6A 424 7.00e-06 c.107.1.2 71342 2qb7A 397 0.000157 1sxjC 340 0.1173 a.80.1.1,c.37.1.20 106085,106086 1rq2A 382 1.026 c.32.1.1,d.79.2.1 105048,105049 2iv2X 715 1.604 b.52.2.2,c.81.1.1 137714,137715 2napA 723 1.732 b.52.2.2,c.81.1.1 26926,35334 1w5fA 353 2.065 c.32.1.1,d.79.2.1 114247,114248 1in6A 334 2.458 a.4.5.11,c.37.1.20 62601,62602 1iqpA 327 2.604 a.80.1.1,c.37.1.20 62649,62650 2v3vA 723 3.074 1in4A 334 4.723 a.4.5.11,c.37.1.20 62597,62598 2q28A 564 5.484 2r6r1 338 6.389 2c31A 568 6.793 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1gtrA 553 7.201 b.53.1.2,c.26.1.1 26939,31578 1qtqA 553 9.036 b.53.1.2,c.26.1.1 26940,31579 2f7lA 455 10.52 1brmA 367 10.72 c.2.1.3,d.81.1.1 30030,39945 1korA 400 11.06 c.26.2.1,d.210.1.1 72824,72825 1vl2A 421 11.19 c.26.2.1,d.210.1.1 108708,108709 1hqcA 324 11.39 a.4.5.11,c.37.1.20 16127,32424 2z4sA 440 13.66 2q0lA 311 15.25 2gcuA 245 15.33 1psdA 409 17.58 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1mb4A 370 19.15 c.2.1.3,d.81.1.1 78908,78909 1fmjA 351 19.41 c.37.1.5 59879 1js3A 486 19.93 c.67.1.6 67215 1cqwA 295 20.11 c.69.1.8 34679 1x6vA 630 20.89 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1bn6A 294 21.10 c.69.1.8 34678 2uz1A 563 23.01 2e7zA 727 23.75 1bn7A 294 23.76 c.69.1.8 34677 2o0mA 345 24.01 1ryiA 382 24.08 c.3.1.2,d.16.1.3 118813,118814 1ihoA 283 27.29 c.26.1.4 62390 1t4bA 367 27.29 c.2.1.3,d.81.1.1 106406,106407 2okgA 255 28.37 2in3A 216 30.80 2g5cA 281 32.76 a.100.1.12,c.2.1.6 134646,134647 1ofuA 320 33.92 c.32.1.1,d.79.2.1 86972,86973 2p10A 286 34.40 2ijrA 300 34.51 1yzyA 413 35.49 c.146.1.1 124292 1n2eA 300 35.52 c.26.1.4 85268 2nqtA 352 36.05 2rdpA 150 37.90 2bifA 469 38.40 c.37.1.7,c.60.1.4 31963,34009 3bk2A 562 38.79 2yyyA 343 39.22 1h0hA 977 40.94 b.52.2.2,c.81.1.1 76435,76436 1yqgA 263 41.30 1efaA 333 42.42 a.35.1.5,c.93.1.1 17106,35691 3bh1A 507 42.98 1jr3A 373 43.51 a.80.1.1,c.37.1.20 63245,63246 1ynuA 473 44.16 c.67.1.4 123762 1vjrA 271 44.80 c.108.1.14 100832 3bpvA 138 44.83 1gdeA 389 45.18 c.67.1.1 60456 3bddA 142 45.94 1ygyA 529 45.94 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1hy3A 294 45.97 c.37.1.5 71090 1b5pA 385 50.51 c.67.1.1 90403 1vpdA 299 51.53 a.100.1.1,c.2.1.6 113951,113952 1sc6A 404 51.60 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2btoA 473 52.74 1yx1A 264 52.80 c.1.15.7 124169 1aquA 297 52.84 c.37.1.5 31942 1yovA 537 53.01 c.111.1.2 123785 2chgA 226 53.12 1y8qA 346 54.71 1m6iA 493 56.15 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2nyxA 168 56.61 1pswA 348 56.92 c.87.1.7 88287 2hufA 393 58.45 2a5hA 416 58.82 1fp4A 492 58.86 c.92.2.3 76187 2ethA 154 60.09 a.4.5.28 132358 1yb4A 295 60.30 1v8fA 276 64.49 c.26.1.4 100503 1cjcA 460 64.56 c.3.1.1,c.4.1.1 30319,30604 1s3jA 155 65.66 a.4.5.28 98437 1jr3D 343 65.99 a.80.1.1,c.37.1.20 63251,63252 1xyfA 436 67.56 b.42.2.1,c.1.8.3 25577,28909 2fbiA 142 67.64 a.4.5.28 133246 1a0dA 440 69.02 c.1.15.3 29533 2cvzA 289 69.47 a.100.1.1,c.2.1.6 130890,130891 1fsz 372 70.75 1k2yX 463 70.76 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1uk8A 282 70.85 c.69.1.10 107907 1f0kA 364 70.88 c.87.1.2 35465 2cfxA 144 71.42 a.4.5.32,d.58.4.2 130395,130396 1z2lA 423 71.86 c.56.5.4,d.58.19.1 124383,124384 2h29A 189 73.53 2p5vA 162 73.66 1qmgA 524 73.79 a.100.1.2,c.2.1.6 18785,30182 2ivfA 976 73.84 1zjjA 263 74.63 1m6nA 802 75.92 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1lnwA 147 76.41 a.4.5.28 78104 1w7lA 422 76.50 c.67.1.1 109226 1vj1A 363 77.17 b.35.1.2,c.2.1.1 100794,100795 1u2pA 163 78.89 2ew2A 316 79.74 1tdj 514 80.31 1sxjA 511 81.09 a.80.1.1,c.37.1.20 106081,106082 1bjwA 382 82.81 c.67.1.1 34349 1r45A 204 83.80 d.166.1.1 111683 1eyzA 392 84.34 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1qisA 396 84.69 c.67.1.1 34284 1sd4A 126 85.29 a.4.5.39 105428 1bifA 469 85.32 c.37.1.7,c.60.1.4 31961,34003 1g3mA 294 86.60 c.37.1.5 83268 1qguA 478 86.65 c.92.2.3 35625 2qytA 317 87.39 2gwhA 298 89.29 2po3A 424 89.34 1dfoA 417 89.58 c.67.1.4 34480