# List of top-scoring protein chains for T0457.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 3.67e-37 c.107.1.2 71342 2hawA 309 2.36e-32 c.107.1.1 136299 2iw4A 309 9.10e-31 1i74A 309 9.21e-31 c.107.1.1 61867 1wppA 311 5.94e-30 c.107.1.1 114828 1k20A 310 1.08e-29 c.107.1.1 68027 2enxA 310 4.15e-29 1wpnA 188 2.07e-27 c.107.1.1 114826 2eb0A 307 1.14e-26 2qb7A 397 3.17e-13 1i1qA 520 3.200 d.161.1.1 61543 1p9nA 170 8.222 c.37.1.10 87997 2oocA 113 8.957 1np6A 174 8.972 c.37.1.10 85954 1xdiA 499 9.781 c.3.1.5,d.87.1.1 115160,115161 2hd1A 326 12.51 a.211.1.2 136338 2yy2A 333 13.60 1wgmA 98 14.37 g.44.1.2 114616 1xi9A 406 14.72 c.67.1.1 115355 2dt8A 280 15.51 1xxlA 239 16.26 c.66.1.41 116203 1texA 287 17.09 c.37.1.5 106818 2raqA 97 17.77 1ywfA 296 17.87 c.45.1.5 124144 2oauA 306 18.94 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1c07A 95 18.96 a.39.1.6 17337 2okkA 497 19.88 3cj1A 456 21.84 1r4wA 226 22.28 c.47.1.13 97050 2hoqA 241 22.69 2ahfA 377 23.31 1pffA 331 24.91 c.67.1.3 104143 3bewA 271 25.38 1k38A 254 25.85 e.3.1.1 84303 3bevA 274 26.64 2qsxA 218 26.77 1lv5A 580 28.28 c.55.3.5,e.8.1.1 84719,84720 1d0cA 444 29.56 d.174.1.1 64769 1oncA 104 29.68 d.5.1.1 37278 2zbtA 297 32.01 2gmkA 104 32.56 1yv7A 102 33.19 2oo6A 409 34.13 2a9gA 418 35.03 d.126.1.4 126435 2ij9A 219 36.08 c.73.1.3 137463 1pu3A 105 37.21 d.5.1.1 95122 2issA 313 37.53 1yaaA 412 37.80 c.67.1.1 34280 2pn1A 331 38.91 1yv4A 104 39.65 3bilA 348 40.45 2iikA 418 40.99 2aq4A 434 41.56 2gfoA 396 43.01 d.3.1.9 135105 2jd1A 398 45.25 1nni1 174 45.25 2z5lA 511 46.41 1exqA 154 46.62 c.55.3.2 33646 2e1zA 415 48.09 2jcxA 398 48.10 1ajsA 412 48.56 c.67.1.1 34276 2abrA 418 48.82 d.126.1.4 126530 2aafA 418 49.83 d.126.1.4 126471 2o9xA 181 53.59 1hv8A 367 53.91 c.37.1.19,c.37.1.19 32405,32406 1h4bA 84 54.59 a.39.1.10 90608 1bi4B 160 54.73 c.55.3.2 33667 2jevA 174 54.81 d.108.1.1 138287 1r8dA 109 55.54 a.6.1.3 104841 1vagA 420 56.52 d.174.1.1 108469 1qhvA 195 56.53 b.21.1.1 23842 2b5gA 171 56.96 d.108.1.1 127892 1idjA 359 56.98 b.80.1.2 28026 2b3uA 171 57.66 d.108.1.1 127797 2fxfA 170 58.75 d.108.1.1 134308 2fm4A 128 59.70 c.8.1.1 133760 1mzjA 339 60.05 c.95.1.2,c.95.1.2 79700,79701 2di4A 238 60.67 a.269.1.1 131522 2vugA 389 61.60 2g04A 359 61.94 2gswA 182 62.80 c.23.5.4 135595 1p6kA 421 64.95 d.174.1.1 94177 1p6iA 421 65.03 d.174.1.1 94173 1zztA 416 65.50 1q2oA 416 65.52 d.174.1.1 95632 2g6oA 416 65.72 d.174.1.1 134715 2bdpA 580 67.27 c.55.3.5,e.8.1.1 33709,43002 2yzrA 330 67.59 1yzxA 226 67.65 1zmrA 387 67.82 1p6mA 417 68.10 d.174.1.1 94181 1znnA 325 68.69 c.1.2.6 125386 2dw7A 389 69.54 c.1.11.2,d.54.1.1 131816,131817 2dw6A 389 69.83 c.1.11.2,d.54.1.1 131808,131809 2hhwA 580 69.85 c.55.3.5,e.8.1.1 136516,136517 1u4bA 580 69.97 c.55.3.5,e.8.1.1 107664,107665 2b5gB 171 70.45 d.108.1.1 127893 2hviA 580 70.58 c.55.3.5,e.8.1.1 136808,136809 1nk4A 580 70.69 c.55.3.5,e.8.1.1 91923,91924 2hhvA 580 71.30 c.55.3.5,e.8.1.1 136514,136515 1om4A 422 72.17 d.174.1.1 87067 2p6nA 191 72.83 1mmvA 419 73.32 d.174.1.1 91317 1xx7A 184 75.06 a.211.1.1 116143 1z5vA 474 75.27 1tzzA 392 76.00 c.1.11.2,d.54.1.1 112896,112897 2g3tA 179 76.43 d.108.1.1 134572 2aciA 418 79.98 d.126.1.4 126551 2g6jA 420 80.62 1qiuA 264 80.99 b.21.1.1,b.83.1.1 23843,28208 1zzqA 420 81.22 d.174.1.1 125914 2g6mA 420 81.39 d.174.1.1 134711 1jkmA 361 84.31 c.69.1.2 34633 1uyrA 737 84.37 c.14.1.4,c.14.1.4 100188,100189 2onhA 543 84.46 1uyvA 737 84.99 c.14.1.4,c.14.1.4 100204,100205 1rlgA 119 85.61 d.79.3.1 104981 2z04A 365 86.59 1rxxA 421 87.11 d.126.1.4 98061 2zf5O 497 87.19 1zzuA 420 87.45 2bpqA 373 88.88 2ebdA 309 89.31