# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 4.23e-24 c.107.1.2 71342 1k20A 310 1.41e-23 c.107.1.1 68027 2eb0A 307 1.76e-21 2qb7A 397 5.60e-18 1wpnA 188 3.21e-15 c.107.1.1 114826 1c7nA 399 1.254 c.67.1.3 34413 1pieA 419 1.743 d.14.1.5,d.58.26.7 94706,94707 1d2fA 390 2.199 c.67.1.3 34411 2o0rA 411 2.672 1q0rA 298 3.378 c.69.1.28 95508 2cstA 411 6.310 c.67.1.1 34273 2z61A 370 6.686 1rrmA 386 6.699 e.22.1.2 105081 1gdeA 389 6.849 c.67.1.1 60456 1ynuA 473 7.377 c.67.1.4 123762 1sc6A 404 7.487 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1v2dA 381 7.581 c.67.1.1 108281 1m7yA 435 7.931 c.67.1.4 78761 1j4aA 333 8.220 c.2.1.4,c.23.12.1 71502,71503 1m3sA 186 8.433 c.80.1.3 78573 1ars 396 8.698 2cz9A 350 8.875 1jftA 340 9.887 a.35.1.5,c.93.1.1 66652,66653 2px6A 316 10.46 1yqgA 263 10.49 2z20A 432 10.78 1vimA 200 10.98 c.80.1.3 100758 2dejA 350 11.20 1i36A 264 11.45 a.100.1.8,c.2.1.6 71108,71109 3brsA 289 11.46 2pocA 367 12.08 1u08A 386 12.10 c.67.1.1 107543 2o1sA 621 12.28 1v4vA 376 12.34 c.87.1.3 100313 2rgyA 290 12.38 1xi9A 406 12.48 c.67.1.1 115355 2ez2A 456 13.61 1w7lA 422 14.02 c.67.1.1 109226 1azwA 313 14.95 c.69.1.7 34658 1gy8A 397 15.78 c.2.1.2 83376 2gekA 406 16.00 1j32A 388 16.03 c.67.1.1 77067 1u2eA 289 16.70 2p1zA 180 17.22 3bf7A 255 17.33 1yaaA 412 18.41 c.67.1.1 34280 1eg5A 384 18.47 c.67.1.3 34429 1js3A 486 18.68 c.67.1.6 67215 1bykA 255 18.93 c.93.1.1 35706 2z1yA 397 19.31 2bkwA 385 19.44 c.67.1.3 128714 1wxiA 275 19.95 c.26.2.1 121400 1pjaA 302 20.33 c.69.1.13 94758 1uu1A 335 20.40 c.67.1.1 99993 2og1A 286 20.91 1jeoA 180 21.13 c.80.1.3 66611 3cwqA 209 21.15 1bw0A 416 22.18 c.67.1.1 34385 2jejA 358 22.94 d.240.1.1,e.8.1.7 138284,138285 1y37A 304 23.17 1ajsA 412 23.71 c.67.1.1 34276 2dr1A 386 24.41 1wstA 417 24.57 c.67.1.1 121244 1uk8A 282 24.92 c.69.1.10 107907 1m32A 366 25.68 c.67.1.3 78508 2oq2A 261 25.75 1jkmA 358 26.11 c.69.1.2 34633 2fn9A 290 26.45 1pmmA 466 27.41 c.67.1.6 94901 2e18A 257 27.51 2ioyA 283 28.55 1rzuA 485 29.02 c.87.1.8 105140 2rjoA 332 29.42 1va4A 279 29.59 c.69.1.12 108458 1bn7A 294 30.55 c.69.1.8 34677 3c6qA 311 30.71 2zg5A 397 31.28 1zoiA 276 31.28 1dxy 333 31.72 3bblA 287 32.57 2e7jA 371 32.72 1f0kA 364 32.93 c.87.1.2 35465 1wm1A 317 33.81 c.69.1.7 109405 2ay1A 394 34.40 c.67.1.1 34357 2iyfA 430 34.90 2gb3A 409 35.14 c.67.1.1 134903 2pg3A 232 35.86 1qj4A 257 36.31 c.69.1.20 34796 1nriA 306 36.95 c.80.1.3 86123 2driA 271 37.37 c.93.1.1 35637 1wuuA 399 38.21 d.14.1.5,d.58.26.7 114900,114901 2df8A 325 38.42 1u4nA 310 38.72 c.69.1.2 113021 1ek6A 348 39.25 c.2.1.2 29800 1o4sA 389 39.82 c.67.1.1 86620 2qvcA 313 40.62 2z9wA 392 40.77 3beoA 375 41.26 2h0aA 276 41.57 2h78A 302 41.67 1uwcA 261 42.67 c.69.1.17 100101 1oj7A 408 43.70 e.22.1.2 103971 1qgoA 264 44.00 c.92.1.2 35596 3d02A 303 44.04 1zq9A 285 44.46 c.66.1.24 125505 1ys7A 233 45.13 a.4.6.1,c.23.1.1 123961,123962 1wvgA 359 45.67 c.2.1.2 121339 1kmkA 406 46.46 c.67.1.3 68696 1xklA 273 46.74 c.69.1.20 115410 2dtvA 397 49.45 1a8qA 274 49.60 c.69.1.12 34702 2bfdA 400 49.66 2iuyA 342 51.12 2fepA 289 51.24 2hy7A 406 51.24 1m6yA 301 51.77 a.60.13.1,c.66.1.23 78716,78717 2fssA 365 51.83 1v72A 356 51.98 c.67.1.1 119860 2csuA 457 52.35 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1zunA 325 52.52 c.26.2.2 125676 2h1vA 310 52.63 1p5dX 463 53.44 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1jmkC 230 53.45 c.69.1.22 71747 2yrrA 353 53.81 2ahrA 259 54.94 a.100.1.10,c.2.1.6 126775,126776 1yizA 429 55.07 c.67.1.1 123375 1x7yA 400 55.17 c.36.1.11 114944 2qruA 274 55.60 1a8sA 273 55.87 c.69.1.12 34710 1ivnA 190 56.04 c.23.10.5 83719 1r1dA 247 56.71 c.69.1.29 96813 1x9iA 302 59.75 c.80.1.1 114997 2r2nA 425 60.28 1uqtA 482 60.30 c.87.1.6 99794 2a2cA 478 61.17 1xdwA 331 61.33 2iksA 293 61.72 2fyfA 398 62.05 1surA 215 64.90 c.26.2.2 31620 2douA 376 65.01 1kgsA 225 65.34 a.4.6.1,c.23.1.1 68596,68597 2e5fA 325 65.48 3brqA 296 65.59 2i2wA 212 65.69 1umdA 367 66.11 c.36.1.11 99599 2q28A 564 66.48 1b6gA 310 66.64 c.69.1.8 34661 2j6iA 364 66.83 1tk9A 188 68.07 c.80.1.3 107082 1lc5A 364 68.18 c.67.1.1 73827 2d59A 144 68.33 c.2.1.8 131266 2cb0A 333 68.59 1rkxA 357 69.12 c.2.1.2 97631 2o3jA 481 69.61 3b9oA 440 69.83 1b5pA 385 70.44 c.67.1.1 90403 3b34A 891 73.44 3canA 182 74.73 3c3kA 285 75.05 1g5bA 221 75.95 d.159.1.3 60261 1womA 271 76.37 2qvbA 297 76.80 1mj5A 302 77.81 c.69.1.8 91285 1t70A 255 78.06 d.159.1.9 112275 2q7wA 396 78.85 1iukA 140 78.86 c.2.1.8 83712 2o7rA 338 80.98 1luaA 287 81.84 c.2.1.7,c.58.1.4 78216,78217 1eluA 390 81.85 c.67.1.3 34434 1r3dA 264 82.29 c.69.1.35 111680 2oqxA 467 83.80 2hoxA 427 84.46 c.67.1.1 136644 1dxyA 333 85.60 c.2.1.4,c.23.12.1 30094,31354 2dgkA 452 86.79 1b6g 310 87.08 2e9xC 219 87.24 2amlA 373 87.52 2hfsA 332 88.57 1vefA 395 89.33 c.67.1.4 120018