# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.25e-24 c.107.1.2 71342 1k20A 310 4.97e-24 c.107.1.1 68027 2eb0A 307 5.77e-22 2qb7A 397 2.28e-18 1wpnA 188 2.71e-15 c.107.1.1 114826 1c7nA 399 1.069 c.67.1.3 34413 1d2fA 390 1.341 c.67.1.3 34411 1pieA 419 1.889 d.14.1.5,d.58.26.7 94706,94707 2o0rA 411 2.959 1m7yA 435 4.227 c.67.1.4 78761 1q0rA 298 5.314 c.69.1.28 95508 1ynuA 473 5.348 c.67.1.4 123762 1jftA 340 5.687 a.35.1.5,c.93.1.1 66652,66653 1sc6A 404 6.396 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1v2dA 381 6.927 c.67.1.1 108281 1j4aA 333 7.076 c.2.1.4,c.23.12.1 71502,71503 1js3A 486 7.587 c.67.1.6 67215 1gdeA 389 7.883 c.67.1.1 60456 2pocA 367 7.995 1i36A 264 8.678 a.100.1.8,c.2.1.6 71108,71109 1u08A 386 8.751 c.67.1.1 107543 2rgyA 290 8.860 2cz9A 350 9.057 1xi9A 406 9.573 c.67.1.1 115355 1rrmA 386 10.56 e.22.1.2 105081 3brsA 289 10.73 2cstA 411 10.81 c.67.1.1 34273 1bw0A 416 10.89 c.67.1.1 34385 1ars 396 11.54 2z20A 432 11.62 3c4vA 426 12.52 1oj7A 408 13.51 e.22.1.2 103971 1yqgA 263 13.88 2px6A 316 13.91 2dejA 350 14.43 1eg5A 384 14.52 c.67.1.3 34429 2zg5A 397 15.25 2dr1A 386 15.48 2ez2A 456 15.68 2z61A 370 15.83 2o1sA 621 16.71 1jeoA 180 16.79 c.80.1.3 66611 2bkwA 385 17.32 c.67.1.3 128714 1wstA 417 17.33 c.67.1.1 121244 1u2eA 289 18.14 2oq2A 261 18.46 2gb3A 409 18.88 c.67.1.1 134903 2z1yA 397 18.90 1j32A 388 20.49 c.67.1.1 77067 1y37A 304 20.61 3bf7A 255 20.69 2p1zA 180 20.76 1ys7A 233 21.18 a.4.6.1,c.23.1.1 123961,123962 2og1A 286 22.44 2bfdA 400 22.73 1ajsA 412 23.57 c.67.1.1 34276 2gekA 406 24.10 1azwA 313 24.41 c.69.1.7 34658 1m3sA 186 24.71 c.80.1.3 78573 1uu1A 335 25.08 c.67.1.1 99993 3bblA 287 25.20 2jejA 358 26.15 d.240.1.1,e.8.1.7 138284,138285 1rzuA 485 26.37 c.87.1.8 105140 1uwcA 261 26.49 c.69.1.17 100101 1m32A 366 27.25 c.67.1.3 78508 2dtvA 397 27.50 1uk8A 282 28.88 c.69.1.10 107907 1wxiA 275 28.88 c.26.2.1 121400 1gy8A 397 29.01 c.2.1.2 83376 1v72A 356 29.63 c.67.1.1 119860 2ioyA 283 29.82 1bykA 255 29.84 c.93.1.1 35706 1wm1A 317 29.89 c.69.1.7 109405 2e7jA 371 29.92 3clkA 290 30.03 1yaaA 412 30.04 c.67.1.1 34280 2qvcA 313 30.28 1t70A 255 30.76 d.159.1.9 112275 2h0aA 276 32.39 1a8qA 274 33.08 c.69.1.12 34702 2yrrA 353 33.58 2h1vA 310 33.92 1va4A 279 34.21 c.69.1.12 108458 1x7yA 400 34.45 c.36.1.11 114944 1m6yA 301 34.83 a.60.13.1,c.66.1.23 78716,78717 3d02A 303 34.89 2fn9A 290 35.27 2h78A 302 35.51 1vjoA 393 35.78 c.67.1.3 100827 1v4vA 376 36.06 c.87.1.3 100313 3cwqA 209 36.83 1kmkA 406 37.55 c.67.1.3 68696 1zunA 325 37.65 c.26.2.2 125676 2driA 271 38.31 c.93.1.1 35637 2z9wA 392 38.45 1b5pA 385 38.60 c.67.1.1 90403 2fepA 289 38.84 1pmmA 466 39.29 c.67.1.6 94901 3c6qA 311 39.31 1dxy 333 39.42 2douA 376 40.46 1nriA 306 40.48 c.80.1.3 86123 1iukA 140 40.71 c.2.1.8 83712 1p5dX 463 41.16 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2r2nA 425 41.31 1u4nA 310 41.71 c.69.1.2 113021 1wuuA 399 41.93 d.14.1.5,d.58.26.7 114900,114901 1w7lA 422 42.31 c.67.1.1 109226 2iksA 293 42.42 1qgoA 264 43.97 c.92.1.2 35596 2iyfA 430 44.44 1vimA 200 44.47 c.80.1.3 100758 2qvbA 297 44.54 1bn7A 294 44.81 c.69.1.8 34677 1ek6A 348 44.94 c.2.1.2 29800 1vefA 395 45.52 c.67.1.4 120018 1g5bA 221 46.14 d.159.1.3 60261 2df8A 325 46.28 1tibA 269 46.67 c.69.1.17 34738 2rjoA 332 47.66 1x9iA 302 48.14 c.80.1.1 114997 1zoiA 276 48.40 1o4sA 389 48.84 c.67.1.1 86620 1r3dA 264 48.85 c.69.1.35 111680 1jkmA 358 49.16 c.69.1.2 34633 1lc5A 364 49.38 c.67.1.1 73827 2cb0A 333 51.77 2fssA 365 54.25 2ivmA 150 54.74 2d59A 144 54.93 c.2.1.8 131266 2fyfA 398 57.07 2ahrA 259 57.29 a.100.1.10,c.2.1.6 126775,126776 2hoxA 427 57.46 c.67.1.1 136644 2ay1A 394 58.69 c.67.1.1 34357 3beoA 375 61.04 3c3kA 285 62.43 2gmsA 390 63.20 1sur 215 64.03 1vdmA 153 64.24 c.61.1.1 119994 1umdA 367 64.96 c.36.1.11 99599 2pv7A 298 65.94 2pg3A 232 66.45 2oatA 439 66.92 c.67.1.4 34452 2o3jA 481 67.51 1wolA 122 68.62 1qj4A 257 68.77 c.69.1.20 34796 1a8sA 273 68.86 c.69.1.12 34710 1mj5A 302 69.15 c.69.1.8 91285 1eluA 390 69.78 c.67.1.3 34434 2a2cA 478 71.39 2e18A 257 71.63 1tk9A 188 72.66 c.80.1.3 107082 1iirA 415 73.23 c.87.1.5 62453 1uqtA 482 73.44 c.87.1.6 99794 2iuyA 342 73.79 2e5fA 325 74.50 2q0xA 335 74.98 2hy7A 406 75.90 1t8tA 271 76.32 c.37.1.5 106685 2i2wA 212 76.55 1r1dA 247 77.15 c.69.1.29 96813 2q7wA 396 77.36 2q28A 564 78.91 1f0kA 364 79.23 c.87.1.2 35465 3tglA 269 81.55 c.69.1.17 34733 1fukA 165 82.20 c.37.1.19 32409 2pbfA 227 83.08 1b6g 310 83.64 1yizA 429 84.69 c.67.1.1 123375 3c5vA 316 84.92 2a3nA 355 85.63 1vljA 407 86.24 e.22.1.2 108832 1luaA 287 86.76 c.2.1.7,c.58.1.4 78216,78217 1d3gA 367 89.13 c.1.4.1 28600 2qz8A 149 89.38 2cyyA 151 89.43 a.4.5.32,d.58.4.2 131028,131029