# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.48e-23 c.107.1.2 71342 1k20A 310 6.29e-23 c.107.1.1 68027 2eb0A 307 1.23e-20 2qb7A 397 1.11e-16 1wpnA 188 2.61e-15 c.107.1.1 114826 1d2fA 390 0.5468 c.67.1.3 34411 1c7nA 399 0.6943 c.67.1.3 34413 1m7yA 435 1.280 c.67.1.4 78761 1pieA 419 1.624 d.14.1.5,d.58.26.7 94706,94707 2o0rA 411 1.816 1xi9A 406 2.197 c.67.1.1 115355 1rrmA 386 2.235 e.22.1.2 105081 2z9wA 392 2.336 1ynuA 473 2.725 c.67.1.4 123762 2jejA 358 3.004 d.240.1.1,e.8.1.7 138284,138285 1gdeA 389 3.769 c.67.1.1 60456 1v2dA 381 4.731 c.67.1.1 108281 1eg5A 384 4.916 c.67.1.3 34429 1bw0A 416 6.486 c.67.1.1 34385 1j32A 388 7.099 c.67.1.1 77067 1zunA 325 7.240 c.26.2.2 125676 2pocA 367 7.721 2gb3A 409 8.142 c.67.1.1 134903 2z61A 370 8.704 2o1sA 621 8.959 1ars 396 9.98 1yaaA 412 10.11 c.67.1.1 34280 2cstA 411 10.33 c.67.1.1 34273 2cz9A 350 11.11 3cwqA 209 11.65 1w7lA 422 11.80 c.67.1.1 109226 1i36A 264 12.14 a.100.1.8,c.2.1.6 71108,71109 2px6A 316 12.18 2yrrA 353 12.35 2rgyA 290 12.91 2z20A 432 13.33 2gs8A 317 14.59 1j4aA 333 16.18 c.2.1.4,c.23.12.1 71502,71503 1js3A 486 16.20 c.67.1.6 67215 2dejA 350 16.80 3brsA 289 17.12 1wxiA 275 17.72 c.26.2.1 121400 1jftA 340 17.77 a.35.1.5,c.93.1.1 66652,66653 1bn7A 294 17.80 c.69.1.8 34677 1u08A 386 18.44 c.67.1.1 107543 1zuwA 272 19.16 1oj7A 408 19.74 e.22.1.2 103971 2hufA 393 20.73 1wstA 417 21.19 c.67.1.1 121244 2dr1A 386 21.89 2z1yA 397 22.71 2ez2A 456 23.34 1f0kA 364 23.75 c.87.1.2 35465 1u2eA 289 24.34 1yqgA 263 24.65 2zg5A 397 24.84 2dtvA 397 25.40 1uk8A 282 25.61 c.69.1.10 107907 1kmkA 406 26.53 c.67.1.3 68696 1vljA 407 26.60 e.22.1.2 108832 2e7jA 371 27.60 1zq9A 285 27.97 c.66.1.24 125505 1ajsA 412 28.15 c.67.1.1 34276 2og1A 286 28.31 1q0rA 298 28.44 c.69.1.28 95508 1m6yA 301 28.82 a.60.13.1,c.66.1.23 78716,78717 1jkmA 358 29.27 c.69.1.2 34633 1surA 215 30.07 c.26.2.2 31620 3c4vA 426 30.10 1bykA 255 30.24 c.93.1.1 35706 1vjoA 393 30.63 c.67.1.3 100827 2bkwA 385 31.05 c.67.1.3 128714 1lc5A 364 31.89 c.67.1.1 73827 1wm1A 317 33.29 c.69.1.7 109405 1m32A 366 34.50 c.67.1.3 78508 3bf7A 255 35.46 1va4A 279 37.58 c.69.1.12 108458 1yizA 429 38.18 c.67.1.1 123375 2oq2A 261 38.54 1sc6A 404 38.72 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1o4sA 389 38.79 c.67.1.1 86620 3bblA 287 38.89 1v72A 356 39.31 c.67.1.1 119860 2hfsA 332 40.22 1gy8A 397 40.71 c.2.1.2 83376 1kvkA 395 41.04 d.14.1.5,d.58.26.3 73060,73061 3caiA 406 42.04 1wuuA 399 43.41 d.14.1.5,d.58.26.7 114900,114901 1b5pA 385 44.56 c.67.1.1 90403 2q28A 564 44.78 2gzmA 267 45.17 2bwnA 401 45.73 c.67.1.4 129368 2bfdA 400 45.78 1ys7A 233 46.31 a.4.6.1,c.23.1.1 123961,123962 2iuyA 342 46.88 2pv7A 298 47.09 1jx4A 352 47.30 d.240.1.1,e.8.1.7 90378,90379 2gekA 406 47.48 2hoxA 427 47.68 c.67.1.1 136644 1pjaA 302 47.78 c.69.1.13 94758 1v4vA 376 47.96 c.87.1.3 100313 1zoiA 276 48.57 1sur 215 51.33 1p5dX 463 51.58 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vimA 200 51.87 c.80.1.3 100758 2a2cA 478 51.93 1uu1A 335 52.04 c.67.1.1 99993 1kgsA 225 52.49 a.4.6.1,c.23.1.1 68596,68597 1svvA 359 52.68 c.67.1.1 106054 2pg3A 232 54.42 1r1dA 247 55.36 c.69.1.29 96813 1pzxA 289 55.60 c.119.1.1 95484 2fn9A 290 55.97 1t3iA 420 56.20 c.67.1.3 106354 1g5bA 221 56.62 d.159.1.3 60261 1dxy 333 57.09 2r2nA 425 57.20 2fepA 289 57.28 1qj4A 257 57.51 c.69.1.20 34796 3clkA 290 58.85 2qvcA 313 58.97 1iirA 415 59.66 c.87.1.5 62453 2pbfA 227 60.31 1xdwA 331 60.98 2j6pA 152 61.87 1rzuA 485 62.81 c.87.1.8 105140 3d02A 303 62.98 1a8qA 274 63.24 c.69.1.12 34702 2ahrA 259 64.19 a.100.1.10,c.2.1.6 126775,126776 1fukA 165 64.39 c.37.1.19 32409 1u4nA 310 65.07 c.69.1.2 113021 2driA 271 65.09 c.93.1.1 35637 2e7xA 150 67.25 1azwA 313 67.63 c.69.1.7 34658 1womA 271 67.97 1tibA 269 68.03 c.69.1.17 34738 2iyfA 430 68.33 2ez9A 603 68.87 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1x7yA 400 69.05 c.36.1.11 114944 2h1vA 310 69.19 1luaA 287 69.23 c.2.1.7,c.58.1.4 78216,78217 1t5iA 172 69.50 c.37.1.19 106450 1yzyA 413 70.22 c.146.1.1 124292 1qgoA 264 70.71 c.92.1.2 35596 2fckA 181 72.70 d.108.1.1 133272 2ioyA 283 72.83 1xahA 354 73.06 3beoA 375 73.09 1tqhA 247 73.52 c.69.1.29 107225 1yioA 208 73.99 a.4.6.2,c.23.1.1 123326,123327 2ay1A 394 76.01 c.67.1.1 34357 2cb0A 333 76.14 2aeuA 374 76.63 c.67.1.8 126646 2oi2A 292 76.89 2douA 376 77.44 2iksA 293 78.20 3c24A 286 78.32 2jg2A 422 78.69 1pmmA 466 79.52 c.67.1.6 94901 1xngA 268 80.55 c.26.2.1 122186 3b46A 447 80.82 2qjcA 262 81.16 2cyyA 151 81.56 a.4.5.32,d.58.4.2 131028,131029 1d3gA 367 83.03 c.1.4.1 28600 3canA 182 83.53 2e18A 257 83.70 2hjvA 163 84.38 2ivmA 150 84.81 1mj5A 302 84.87 c.69.1.8 91285 2csuA 457 85.50 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1m3sA 186 85.71 c.80.1.3 78573 1jq5A 370 85.75 e.22.1.2 67084 2qs7A 144 86.39 1wy5A 317 86.48 c.26.2.5,d.229.1.1 121428,121429 2o1eA 312 86.95 2qm8A 337 87.61 1x3sA 195 88.48 c.37.1.8 121670 1sw2A 275 89.59 c.94.1.1 106064