# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.46e-26 c.107.1.2 71342 1k20A 310 2.15e-26 c.107.1.1 68027 2eb0A 307 4.11e-24 2qb7A 397 1.65e-20 1wpnA 188 7.92e-17 c.107.1.1 114826 1c7nA 399 0.6992 c.67.1.3 34413 1d2fA 390 0.9504 c.67.1.3 34411 1pieA 419 1.947 d.14.1.5,d.58.26.7 94706,94707 2z61A 370 2.470 2o0rA 411 3.352 2dejA 350 3.676 2cz9A 350 3.690 1w7lA 422 3.922 c.67.1.1 109226 1q0rA 298 4.199 c.69.1.28 95508 1rrmA 386 4.232 e.22.1.2 105081 1gdeA 389 4.267 c.67.1.1 60456 2bkwA 385 4.617 c.67.1.3 128714 2jejA 358 4.844 d.240.1.1,e.8.1.7 138284,138285 1m7yA 435 5.065 c.67.1.4 78761 1j32A 388 5.651 c.67.1.1 77067 2z20A 432 6.077 1xi9A 406 6.211 c.67.1.1 115355 1ynuA 473 6.592 c.67.1.4 123762 2ez2A 456 7.664 1wxiA 275 7.727 c.26.2.1 121400 2cstA 411 7.813 c.67.1.1 34273 2gb3A 409 8.178 c.67.1.1 134903 1ars 396 8.186 2rgyA 290 8.431 1eg5A 384 9.692 c.67.1.3 34429 1j4aA 333 10.40 c.2.1.4,c.23.12.1 71502,71503 1wstA 417 11.70 c.67.1.1 121244 1bn7A 294 11.80 c.69.1.8 34677 2pocA 367 12.61 1v4vA 376 12.63 c.87.1.3 100313 1yqgA 263 12.69 2px6A 316 13.75 2z1yA 397 14.47 2oq2A 261 14.51 2o1sA 621 15.02 1i36A 264 15.19 a.100.1.8,c.2.1.6 71108,71109 2yrrA 353 15.32 1v2dA 381 15.88 c.67.1.1 108281 1gy8A 397 16.40 c.2.1.2 83376 3brsA 289 16.57 1jftA 340 16.79 a.35.1.5,c.93.1.1 66652,66653 1js3A 486 16.92 c.67.1.6 67215 2dr1A 386 17.10 1yaaA 412 17.37 c.67.1.1 34280 2zg5A 397 18.25 1oj7A 408 18.55 e.22.1.2 103971 1yizA 429 18.72 c.67.1.1 123375 2h1vA 310 19.68 1bykA 255 19.93 c.93.1.1 35706 2gekA 406 20.06 2dtvA 397 20.28 1u08A 386 20.75 c.67.1.1 107543 2ay1A 394 20.99 c.67.1.1 34357 1uu1A 335 21.84 c.67.1.1 99993 1wuuA 399 21.91 d.14.1.5,d.58.26.7 114900,114901 1bw0A 416 22.11 c.67.1.1 34385 1m32A 366 22.36 c.67.1.3 78508 1sc6A 404 22.37 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3bblA 287 24.27 1azwA 313 24.63 c.69.1.7 34658 2iuyA 342 24.84 1o4sA 389 25.02 c.67.1.1 86620 1uk8A 282 28.04 c.69.1.10 107907 1y37A 304 30.25 1uekA 275 30.86 d.14.1.5,d.58.26.5 88483,88484 1wm1A 317 30.99 c.69.1.7 109405 1vljA 407 31.29 e.22.1.2 108832 1ajsA 412 31.35 c.67.1.1 34276 2e7jA 371 32.33 3cwqA 209 32.57 2r2nA 425 32.76 2fn9A 290 32.76 1ek6A 348 32.99 c.2.1.2 29800 1womA 271 33.23 1kmkA 406 33.82 c.67.1.3 68696 1zoiA 276 34.68 2bwnA 401 35.05 c.67.1.4 129368 1tqhA 247 35.21 c.69.1.29 107225 2gs8A 317 35.37 1r1dA 247 35.49 c.69.1.29 96813 3beoA 375 35.85 2yvaA 196 36.56 1jeoA 180 36.61 c.80.1.3 66611 1zunA 325 37.21 c.26.2.2 125676 3d02A 303 37.71 1qgoA 264 37.80 c.92.1.2 35596 2csuA 457 38.21 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3bf7A 255 38.22 2ioyA 283 38.34 1v72A 356 38.93 c.67.1.1 119860 2p1zA 180 40.07 3b34A 891 40.22 1d3gA 367 40.43 c.1.4.1 28600 2douA 376 41.12 3canA 182 42.13 1u2eA 289 42.15 1p5dX 463 42.17 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1mj5A 302 43.34 c.69.1.8 91285 2oi2A 292 43.45 2pg3A 232 43.54 1eluA 390 43.97 c.67.1.3 34434 2h78A 302 44.43 2fepA 289 44.45 1xqwA 293 46.12 1qj4A 257 46.23 c.69.1.20 34796 2iyfA 430 46.82 2og1A 286 46.91 1ys7A 233 48.15 a.4.6.1,c.23.1.1 123961,123962 2z9wA 392 48.52 1m3sA 186 49.71 c.80.1.3 78573 1jkmA 358 51.10 c.69.1.2 34633 1rzuA 485 51.46 c.87.1.8 105140 3bwxA 285 52.74 3bwnA 391 52.75 1vefA 395 53.03 c.67.1.4 120018 1vimA 200 55.41 c.80.1.3 100758 2iksA 293 55.70 2q28A 564 55.76 2driA 271 56.19 c.93.1.1 35637 1f0kA 364 56.87 c.87.1.2 35465 1g5bA 221 57.69 d.159.1.3 60261 1pjaA 302 58.09 c.69.1.13 94758 1u4nA 310 58.39 c.69.1.2 113021 1r3dA 264 58.49 c.69.1.35 111680 2a2cA 478 59.49 1va4A 279 60.48 c.69.1.12 108458 2hfsA 332 60.73 1tk9A 188 61.12 c.80.1.3 107082 1eq2A 310 61.30 c.2.1.2 29814 1pmmA 466 62.75 c.67.1.6 94901 1kkhA 317 63.22 d.14.1.5,d.58.26.3 72645,72646 1gsaA 316 63.59 c.30.1.3,d.142.1.1 31718,41477 2d59A 144 65.07 c.2.1.8 131266 1b5pA 385 65.18 c.67.1.1 90403 2fyfA 398 65.22 1lc5A 364 65.35 c.67.1.1 73827 2bfdA 400 67.80 3bueA 79 68.05 2qvcA 313 68.76 1umdA 367 70.12 c.36.1.11 99599 2e87A 357 71.12 1a8qA 274 71.12 c.69.1.12 34702 1m6yA 301 72.02 a.60.13.1,c.66.1.23 78716,78717 1uc8A 280 72.65 c.30.1.6,d.142.1.7 99165,99166 1iirA 415 74.31 c.87.1.5 62453 1zq9A 285 75.12 c.66.1.24 125505 1kgsA 225 77.26 a.4.6.1,c.23.1.1 68596,68597 3c6qA 311 77.95 1zpdA 568 78.48 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1w78A 422 78.51 2hdyA 440 79.37 2g7zA 282 81.20 2q71A 356 81.26 1pzxA 289 83.11 c.119.1.1 95484 2q0oA 236 83.66 2qvbA 297 83.70 2o3jA 481 83.95 1m33A 258 84.09 c.69.1.26 78514 2q0xA 335 84.26 1svvA 359 84.27 c.67.1.1 106054 2dt8A 280 84.90 2df8A 325 86.12 2h0aA 276 86.30 2j6pA 152 86.80 2rjoA 332 87.04 3b9oA 440 87.76 1xngA 268 88.47 c.26.2.1 122186 2i2wA 212 88.63 2e18A 257 89.29