# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 3.08e-25 c.107.1.2 71342 1k20A 310 8.72e-25 c.107.1.1 68027 2eb0A 307 1.86e-22 2qb7A 397 1.93e-19 1wpnA 188 8.94e-16 c.107.1.1 114826 1c7nA 399 1.085 c.67.1.3 34413 1d2fA 390 1.904 c.67.1.3 34411 2o0rA 411 2.919 1rrmA 386 2.961 e.22.1.2 105081 2z61A 370 3.013 1pieA 419 3.894 d.14.1.5,d.58.26.7 94706,94707 1w7lA 422 3.997 c.67.1.1 109226 1q0rA 298 4.055 c.69.1.28 95508 1m7yA 435 4.473 c.67.1.4 78761 2gb3A 409 5.015 c.67.1.1 134903 1ynuA 473 5.151 c.67.1.4 123762 1gdeA 389 6.159 c.67.1.1 60456 2bkwA 385 6.536 c.67.1.3 128714 1j32A 388 6.949 c.67.1.1 77067 1xi9A 406 7.316 c.67.1.1 115355 2rgyA 290 7.339 2jejA 358 7.587 d.240.1.1,e.8.1.7 138284,138285 1v2dA 381 7.669 c.67.1.1 108281 1wxiA 275 7.689 c.26.2.1 121400 2pocA 367 7.750 1bn7A 294 7.784 c.69.1.8 34677 2cz9A 350 7.932 2ez2A 456 8.299 2z20A 432 8.459 2dejA 350 8.714 1eg5A 384 9.428 c.67.1.3 34429 2yrrA 353 10.10 2px6A 316 10.21 1jftA 340 10.44 a.35.1.5,c.93.1.1 66652,66653 2o1sA 621 10.88 1ars 396 11.47 2dr1A 386 11.89 1gy8A 397 12.01 c.2.1.2 83376 1azwA 313 12.21 c.69.1.7 34658 2cstA 411 13.60 c.67.1.1 34273 2oq2A 261 13.79 2zg5A 397 14.50 2z1yA 397 15.00 1js3A 486 15.57 c.67.1.6 67215 3brsA 289 15.59 1u08A 386 15.72 c.67.1.1 107543 1ek6A 348 16.30 c.2.1.2 29800 1j4aA 333 16.51 c.2.1.4,c.23.12.1 71502,71503 1wstA 417 16.59 c.67.1.1 121244 1oj7A 408 16.83 e.22.1.2 103971 1v4vA 376 16.98 c.87.1.3 100313 1womA 271 17.37 1m32A 366 17.37 c.67.1.3 78508 1uk8A 282 17.87 c.69.1.10 107907 1yqgA 263 18.79 1yaaA 412 19.36 c.67.1.1 34280 2douA 376 19.74 1yizA 429 19.77 c.67.1.1 123375 1eluA 390 20.90 c.67.1.3 34434 1bw0A 416 20.94 c.67.1.1 34385 1zoiA 276 21.04 1i36A 264 21.38 a.100.1.8,c.2.1.6 71108,71109 2gekA 406 21.66 3bblA 287 22.00 2dtvA 397 22.38 1bykA 255 22.62 c.93.1.1 35706 1o4sA 389 22.83 c.67.1.1 86620 2csuA 457 22.84 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1zunA 325 23.20 c.26.2.2 125676 2bwnA 401 24.33 c.67.1.4 129368 2iuyA 342 24.80 2r2nA 425 24.93 2e7jA 371 25.18 1jeoA 180 25.44 c.80.1.3 66611 2h1vA 310 25.58 1mj5A 302 26.00 c.69.1.8 91285 2yvaA 196 26.21 2fn9A 290 26.21 2og1A 286 27.02 1r1dA 247 28.18 c.69.1.29 96813 1pjaA 302 28.32 c.69.1.13 94758 1sc6A 404 28.86 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3cwqA 209 29.02 1xqwA 293 29.40 1tqhA 247 29.90 c.69.1.29 107225 1qgoA 264 30.45 c.92.1.2 35596 2fepA 289 31.06 2z9wA 392 31.24 2ay1A 394 31.99 c.67.1.1 34357 3beoA 375 32.55 1v72A 356 33.25 c.67.1.1 119860 1y37A 304 33.32 1wm1A 317 33.67 c.69.1.7 109405 1uu1A 335 34.36 c.67.1.1 99993 2pg3A 232 35.57 1u2eA 289 36.47 1qj4A 257 37.58 c.69.1.20 34796 1vimA 200 38.14 c.80.1.3 100758 2p1zA 180 40.24 1m3sA 186 40.53 c.80.1.3 78573 2ioyA 283 40.90 1va4A 279 41.30 c.69.1.12 108458 1kmkA 406 41.37 c.67.1.3 68696 1k07A 263 41.43 d.157.1.1 77218 1tk9A 188 42.08 c.80.1.3 107082 1vljA 407 42.22 e.22.1.2 108832 3bf7A 255 43.78 3d02A 303 44.20 1f0kA 364 44.46 c.87.1.2 35465 3bwxA 285 44.51 1rzuA 485 44.51 c.87.1.8 105140 3bwnA 391 45.40 1lc5A 364 45.56 c.67.1.1 73827 1wuuA 399 46.23 d.14.1.5,d.58.26.7 114900,114901 1ajsA 412 46.71 c.67.1.1 34276 1m6yA 301 47.92 a.60.13.1,c.66.1.23 78716,78717 2fyfA 398 48.63 1uekA 275 49.50 d.14.1.5,d.58.26.5 88483,88484 1ys7A 233 49.57 a.4.6.1,c.23.1.1 123961,123962 1p5dX 463 51.03 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2gs8A 317 51.42 1a8qA 274 53.15 c.69.1.12 34702 1u4nA 310 54.09 c.69.1.2 113021 2i2wA 212 54.69 2iyfA 430 54.69 1g5bA 221 54.83 d.159.1.3 60261 1eq2A 310 54.89 c.2.1.2 29814 2e87A 357 55.29 2driA 271 56.72 c.93.1.1 35637 2rjoA 332 56.88 1pmmA 466 57.06 c.67.1.6 94901 2h78A 302 57.12 1d3gA 367 58.23 c.1.4.1 28600 1vefA 395 59.67 c.67.1.4 120018 1xklA 273 60.32 c.69.1.20 115410 1w23A 360 60.39 c.67.1.4 114088 1zq9A 285 60.84 c.66.1.24 125505 2qvcA 313 62.51 3c6qA 311 62.87 1r3dA 264 63.33 c.69.1.35 111680 1jkmA 358 63.36 c.69.1.2 34633 1x9iA 302 63.85 c.80.1.1 114997 1surA 215 64.25 c.26.2.2 31620 1svvA 359 64.35 c.67.1.1 106054 2iksA 293 64.85 3bueA 79 66.01 3brqA 296 66.63 2oqxA 467 67.25 1wyzA 242 68.56 c.90.1.1 121471 2jg2A 422 69.37 2hufA 393 71.14 3c5vA 316 71.15 1b5pA 385 71.40 c.67.1.1 90403 2e18A 257 71.88 1t70A 255 71.98 d.159.1.9 112275 1umdA 367 72.44 c.36.1.11 99599 2q28A 564 72.51 3canA 182 73.41 2d59A 144 73.79 c.2.1.8 131266 3caiA 406 75.64 2h0aA 276 76.32 1w85B 324 77.27 c.36.1.7,c.48.1.2 114336,114337 2pujA 286 77.90 1umdB 324 78.13 c.36.1.7,c.48.1.2 99600,99601 1a8sA 273 79.32 c.69.1.12 34710 3b34A 891 81.07 2cb0A 333 81.20 2df8A 325 81.91 1wvgA 359 83.03 c.2.1.2 121339 2bfdA 400 83.74 2q0xA 335 84.25 8abpA 306 84.85 c.93.1.1 35647 1m33A 258 84.98 c.69.1.26 78514 2e5fA 325 86.07 1iirA 415 87.09 c.87.1.5 62453 2q71A 356 88.43