# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.84e-24 c.107.1.2 71342 1k20A 310 3.71e-24 c.107.1.1 68027 2eb0A 307 5.20e-22 2qb7A 397 5.02e-19 1wpnA 188 2.51e-15 c.107.1.1 114826 1c7nA 399 0.9003 c.67.1.3 34413 1d2fA 390 1.708 c.67.1.3 34411 1rrmA 386 2.398 e.22.1.2 105081 2o0rA 411 2.841 2z61A 370 3.334 1w7lA 422 3.420 c.67.1.1 109226 1pieA 419 3.497 d.14.1.5,d.58.26.7 94706,94707 1q0rA 298 3.624 c.69.1.28 95508 2gb3A 409 5.405 c.67.1.1 134903 2bkwA 385 5.941 c.67.1.3 128714 1m7yA 435 5.989 c.67.1.4 78761 1gdeA 389 5.990 c.67.1.1 60456 1j32A 388 6.099 c.67.1.1 77067 2z20A 432 6.410 1ynuA 473 6.583 c.67.1.4 123762 1xi9A 406 6.790 c.67.1.1 115355 2yrrA 353 6.910 2px6A 316 7.471 2pocA 367 7.942 2dejA 350 8.338 1v2dA 381 8.439 c.67.1.1 108281 2rgyA 290 8.601 2cz9A 350 8.908 1ars 396 9.420 1gy8A 397 9.659 c.2.1.2 83376 2z1yA 397 9.793 1bn7A 294 10.29 c.69.1.8 34677 2jejA 358 10.33 d.240.1.1,e.8.1.7 138284,138285 2cstA 411 10.58 c.67.1.1 34273 2dr1A 386 10.68 1eg5A 384 10.91 c.67.1.3 34429 2ez2A 456 11.13 1jftA 340 11.25 a.35.1.5,c.93.1.1 66652,66653 1wstA 417 11.32 c.67.1.1 121244 1wxiA 275 11.75 c.26.2.1 121400 2zg5A 397 12.07 1azwA 313 13.33 c.69.1.7 34658 2dtvA 397 13.57 1ek6A 348 13.67 c.2.1.2 29800 1m32A 366 14.61 c.67.1.3 78508 1yaaA 412 14.61 c.67.1.1 34280 1u08A 386 15.18 c.67.1.1 107543 1j4aA 333 15.28 c.2.1.4,c.23.12.1 71502,71503 3brsA 289 15.42 1js3A 486 15.93 c.67.1.6 67215 2o1sA 621 16.71 1yizA 429 16.84 c.67.1.1 123375 1yqgA 263 16.92 2oq2A 261 17.68 1i36A 264 18.09 a.100.1.8,c.2.1.6 71108,71109 1uk8A 282 18.45 c.69.1.10 107907 1oj7A 408 19.32 e.22.1.2 103971 1bw0A 416 19.38 c.67.1.1 34385 2iuyA 342 19.70 1sc6A 404 20.59 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1bykA 255 20.85 c.93.1.1 35706 1zoiA 276 22.56 2douA 376 23.82 2ay1A 394 24.11 c.67.1.1 34357 1womA 271 24.61 2z9wA 392 24.62 2fn9A 290 24.84 2h1vA 310 25.13 1xqwA 293 25.59 2e7jA 371 25.88 2gekA 406 25.92 1va4A 279 26.48 c.69.1.12 108458 1kmkA 406 26.55 c.67.1.3 68696 1r1dA 247 26.66 c.69.1.29 96813 1wm1A 317 26.71 c.69.1.7 109405 3cwqA 209 27.03 1y37A 304 27.64 2r2nA 425 28.88 1o4sA 389 29.07 c.67.1.1 86620 2og1A 286 29.18 2csuA 457 29.33 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1v4vA 376 29.91 c.87.1.3 100313 1mj5A 302 30.06 c.69.1.8 91285 1eluA 390 30.75 c.67.1.3 34434 2pg3A 232 31.31 1uu1A 335 32.41 c.67.1.1 99993 3bblA 287 32.55 1u2eA 289 32.58 1tqhA 247 32.70 c.69.1.29 107225 1zunA 325 33.72 c.26.2.2 125676 1v72A 356 34.25 c.67.1.1 119860 3bf7A 255 34.63 2yvaA 196 34.81 1k07A 263 35.84 d.157.1.1 77218 1jeoA 180 36.07 c.80.1.3 66611 1pjaA 302 36.97 c.69.1.13 94758 1ajsA 412 37.07 c.67.1.1 34276 1wuuA 399 38.18 d.14.1.5,d.58.26.7 114900,114901 2bwnA 401 39.02 c.67.1.4 129368 2p1zA 180 40.48 2fyfA 398 41.39 3bwnA 391 42.30 1m3sA 186 43.05 c.80.1.3 78573 1pmmA 466 43.31 c.67.1.6 94901 2fepA 289 43.53 1qgoA 264 43.90 c.92.1.2 35596 1vefA 395 44.26 c.67.1.4 120018 2q28A 564 44.45 2e87A 357 44.56 1qj4A 257 45.58 c.69.1.20 34796 1rzuA 485 46.22 c.87.1.8 105140 3beoA 375 46.45 1vljA 407 46.56 e.22.1.2 108832 3bwxA 285 47.27 1lc5A 364 49.11 c.67.1.1 73827 2h78A 302 49.38 1r3dA 264 49.59 c.69.1.35 111680 1a8qA 274 52.23 c.69.1.12 34702 1a8sA 273 54.03 c.69.1.12 34710 2ioyA 283 54.12 2q71A 356 54.23 3bueA 79 54.30 1d3gA 367 55.15 c.1.4.1 28600 1f0kA 364 56.20 c.87.1.2 35465 3d02A 303 56.33 1ys7A 233 56.91 a.4.6.1,c.23.1.1 123961,123962 1jkmA 358 57.54 c.69.1.2 34633 1p5dX 463 58.15 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vimA 200 58.19 c.80.1.3 100758 1w23A 360 59.04 c.67.1.4 114088 1m6yA 301 59.38 a.60.13.1,c.66.1.23 78716,78717 1zq9A 285 59.62 c.66.1.24 125505 1xklA 273 60.56 c.69.1.20 115410 2hoxA 427 60.96 c.67.1.1 136644 1w85B 324 61.11 c.36.1.7,c.48.1.2 114336,114337 3c6qA 311 61.75 1x9iA 302 62.42 c.80.1.1 114997 1uekA 275 63.04 d.14.1.5,d.58.26.5 88483,88484 2hufA 393 63.24 1b5pA 385 65.03 c.67.1.1 90403 1wyzA 242 65.57 c.90.1.1 121471 2iyfA 430 66.33 1eq2A 310 67.44 c.2.1.2 29814 2iksA 293 68.17 3b34A 891 68.76 2driA 271 70.03 c.93.1.1 35637 1tk9A 188 71.26 c.80.1.3 107082 1wvgA 359 72.66 c.2.1.2 121339 2gs8A 317 74.61 1svvA 359 74.66 c.67.1.1 106054 2qvcA 313 75.45 1vjoA 393 75.58 c.67.1.3 100827 2pujA 286 75.87 2q0xA 335 76.53 2ipxA 233 78.16 1u4nA 310 79.51 c.69.1.2 113021 2d59A 144 79.58 c.2.1.8 131266 1g5bA 221 81.27 d.159.1.3 60261 2p5mA 83 81.79 2oqxA 467 81.95 1m33A 258 82.95 c.69.1.26 78514 3brqA 296 85.67 8abpA 306 85.77 c.93.1.1 35647 2rhwA 283 85.85 1lk9A 448 86.40 c.67.1.1 78057 1t3iA 420 86.53 c.67.1.3 106354 1l7aA 318 88.63 c.69.1.25 77772 1mtzA 293 89.29 c.69.1.7 79467