# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 3.10e-25 c.107.1.2 71342 1k20A 310 1.07e-23 c.107.1.1 68027 2eb0A 307 8.92e-22 2qb7A 397 1.12e-18 1wpnA 188 2.40e-16 c.107.1.1 114826 2o0rA 411 0.8483 1v2dA 381 1.171 c.67.1.1 108281 1gdeA 389 1.428 c.67.1.1 60456 2z1yA 397 1.648 2dtvA 397 2.780 1m7yA 435 3.661 c.67.1.4 78761 1c7nA 399 4.202 c.67.1.3 34413 1xi9A 406 4.429 c.67.1.1 115355 2cz9A 350 4.552 1j32A 388 4.565 c.67.1.1 77067 2z20A 432 5.113 1u08A 386 5.201 c.67.1.1 107543 1rrmA 386 5.655 e.22.1.2 105081 1js3A 486 6.922 c.67.1.6 67215 2yrrA 353 6.935 3c4vA 426 6.953 3brsA 289 7.285 2dejA 350 7.312 2pocA 367 7.898 2zg5A 397 7.912 1d2fA 390 8.589 c.67.1.3 34411 1pieA 419 9.457 d.14.1.5,d.58.26.7 94706,94707 2z61A 370 10.04 1o4sA 389 12.63 c.67.1.1 86620 2rgyA 290 12.83 2gb3A 409 12.87 c.67.1.1 134903 1ars 396 13.54 1oj7A 408 15.12 e.22.1.2 103971 1bw0A 416 15.18 c.67.1.1 34385 1rrvA 416 15.85 c.87.1.5 105083 1rzuA 485 16.21 c.87.1.8 105140 1wstA 417 18.73 c.67.1.1 121244 1vjoA 393 19.27 c.67.1.3 100827 1w7lA 422 19.33 c.67.1.1 109226 2hufA 393 20.63 1ynuA 473 21.93 c.67.1.4 123762 2dr1A 386 24.78 2a2cA 478 24.81 2bkwA 385 24.89 c.67.1.3 128714 1azwA 313 24.92 c.69.1.7 34658 2jejA 358 25.00 d.240.1.1,e.8.1.7 138284,138285 2amlA 373 25.95 1bykA 255 26.45 c.93.1.1 35706 1lc5A 364 27.21 c.67.1.1 73827 2cyyA 151 27.32 a.4.5.32,d.58.4.2 131028,131029 1kmkA 406 27.59 c.67.1.3 68696 1v72A 356 27.93 c.67.1.1 119860 1m32A 366 28.56 c.67.1.3 78508 2cb0A 333 28.62 2dt8A 280 28.75 1pmmA 466 29.01 c.67.1.6 94901 2oq2A 261 30.39 2iw1A 374 30.65 c.87.1.8 137738 1yaaA 412 30.67 c.67.1.1 34280 1vp4A 425 30.71 c.67.1.1 113935 1xngA 268 31.42 c.26.2.1 122186 2fn9A 290 32.83 2fckA 181 34.03 d.108.1.1 133272 2bg5A 324 34.73 1eg5A 384 34.81 c.67.1.3 34429 2iyfA 430 34.83 1wxiA 275 35.01 c.26.2.1 121400 2cstA 411 36.39 c.67.1.1 34273 1f0kA 364 36.51 c.87.1.2 35465 2qvcA 313 36.51 2dqbA 376 37.61 1v4vA 376 39.26 c.87.1.3 100313 1uu1A 335 40.87 c.67.1.1 99993 2c81A 418 41.56 1yqgA 263 41.92 1x9iA 302 42.33 c.80.1.1 114997 1yzyA 413 43.30 c.146.1.1 124292 1kvkA 395 43.64 d.14.1.5,d.58.26.3 73060,73061 2iksA 293 44.83 2douA 376 44.95 3beoA 375 45.25 1o69A 394 45.31 c.67.1.4 92560 1kqpA 271 46.91 c.26.2.1 72883 2p1zA 180 47.56 1yizA 429 48.12 c.67.1.1 123375 1u5kA 244 48.35 b.40.4.13,g.45.1.2 113038,113039 2ay1A 394 48.54 c.67.1.1 34357 3cloA 258 48.95 2o7rA 338 50.62 2hfsA 332 51.08 2g7zA 282 52.32 2ordA 397 52.42 2yzhA 171 52.80 2pgsA 451 52.95 1wy5A 317 53.44 c.26.2.5,d.229.1.1 121428,121429 3d02A 303 53.96 1iirA 415 54.72 c.87.1.5 62453 1vimA 200 54.98 c.80.1.3 100758 2i2wA 212 55.08 1ajsA 412 55.43 c.67.1.1 34276 2qz8A 149 56.86 8abp 306 57.84 2driA 271 59.20 c.93.1.1 35637 2csuA 457 59.63 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2yvaA 196 60.35 3bn1A 373 60.48 2ioyA 283 61.30 2fepA 289 61.33 1fc4A 401 61.53 c.67.1.4 59760 2qvbA 297 61.71 1vmeA 410 64.08 c.23.5.1,d.157.1.3 108893,108894 2iyaA 424 67.89 1jq5A 370 68.20 e.22.1.2 67084 2ipxA 233 68.96 2e7jA 371 69.52 3canA 182 70.17 2ogeA 399 70.20 2r2nA 425 70.26 2p6pA 384 70.46 1vljA 407 70.89 e.22.1.2 108832 1pzxA 289 71.22 c.119.1.1 95484 1y1lA 124 72.30 c.44.1.1 116341 2e18A 257 73.29 2qfnA 138 73.74 1vdmA 153 74.34 c.61.1.1 119994 2q14A 410 74.75 1wuuA 399 74.81 d.14.1.5,d.58.26.7 114900,114901 1tibA 269 74.99 c.69.1.17 34738 1jeoA 180 75.33 c.80.1.3 66611 2ez9A 603 75.51 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1r1dA 247 76.13 c.69.1.29 96813 2o3jA 481 76.89 1xrjA 261 77.50 c.37.1.6 122256 2r8oA 669 77.92 2gzsA 278 78.51 2hmhA 152 80.76 2fyfA 398 81.08 3c6qA 311 81.52 3bf7A 255 82.52 2r85A 334 82.83 2q7wA 396 83.36 2pbfA 227 83.81 2gekA 406 84.10 1h1dA 221 84.29 c.66.1.1 83452 1g8aA 227 84.40 c.66.1.3 90506 2o1eA 312 87.66 2rjoA 332 88.16 1xhfA 123 88.69 c.23.1.1 122003 2qzjA 136 88.94 1e4eA 343 89.21 c.30.1.2,d.142.1.1 59221,59222