# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 3.82e-29 c.107.1.2 71342 1k20A 310 4.26e-29 c.107.1.1 68027 2eb0A 307 1.63e-26 2qb7A 397 4.71e-22 1wpnA 188 1.55e-18 c.107.1.1 114826 1pieA 419 0.9114 d.14.1.5,d.58.26.7 94706,94707 1c7nA 399 1.522 c.67.1.3 34413 2jejA 358 2.507 d.240.1.1,e.8.1.7 138284,138285 1rrmA 386 3.422 e.22.1.2 105081 2o0rA 411 4.502 1q0rA 298 4.600 c.69.1.28 95508 1wxiA 275 4.611 c.26.2.1 121400 2gb3A 409 4.638 c.67.1.1 134903 1d2fA 390 6.063 c.67.1.3 34411 2z61A 370 6.211 2o1sA 621 6.349 1i36A 264 6.521 a.100.1.8,c.2.1.6 71108,71109 1azwA 313 7.323 c.69.1.7 34658 3brsA 289 7.778 1gdeA 389 7.814 c.67.1.1 60456 1j4aA 333 7.834 c.2.1.4,c.23.12.1 71502,71503 1wstA 417 8.207 c.67.1.1 121244 2cz9A 350 9.678 2pocA 367 10.57 2dejA 350 10.78 1m7yA 435 10.90 c.67.1.4 78761 1uk8A 282 11.02 c.69.1.10 107907 1w7lA 422 11.45 c.67.1.1 109226 2z20A 432 11.67 2z1yA 397 11.83 2rgyA 290 11.84 1js3A 486 11.89 c.67.1.6 67215 1f0kA 364 11.97 c.87.1.2 35465 3cwqA 209 12.06 1xi9A 406 12.46 c.67.1.1 115355 1ys7A 233 13.19 a.4.6.1,c.23.1.1 123961,123962 2bkwA 385 13.58 c.67.1.3 128714 1jftA 340 14.29 a.35.1.5,c.93.1.1 66652,66653 2yrrA 353 14.47 1yaaA 412 14.52 c.67.1.1 34280 1vimA 200 15.12 c.80.1.3 100758 1u08A 386 15.65 c.67.1.1 107543 1j32A 388 16.03 c.67.1.1 77067 1ynuA 473 16.17 c.67.1.4 123762 1jkmA 358 16.33 c.69.1.2 34633 2cstA 411 16.36 c.67.1.1 34273 2df8A 325 16.47 1ars 396 16.52 2z9wA 392 16.57 1sc6A 404 16.66 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1v2dA 381 16.88 c.67.1.1 108281 1r1dA 247 17.88 c.69.1.29 96813 2csuA 457 17.96 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2dr1A 386 19.51 1bw0A 416 19.58 c.67.1.1 34385 2zg5A 397 20.07 2ez2A 456 20.47 2q0oA 236 22.83 1uu1A 335 23.12 c.67.1.1 99993 1rzuA 485 23.84 c.87.1.8 105140 3bf7A 255 23.98 1jeoA 180 24.37 c.80.1.3 66611 1wuuA 399 24.51 d.14.1.5,d.58.26.7 114900,114901 1m3sA 186 25.10 c.80.1.3 78573 1eg5A 384 25.20 c.67.1.3 34429 1vljA 407 26.23 e.22.1.2 108832 1zq9A 285 26.31 c.66.1.24 125505 1bn7A 294 26.62 c.69.1.8 34677 2p1zA 180 27.89 1qj4A 257 27.95 c.69.1.20 34796 2oq2A 261 27.96 1jmkC 230 28.38 c.69.1.22 71747 2e18A 257 28.54 1gy8A 397 28.76 c.2.1.2 83376 1yqgA 263 29.00 1eluA 390 29.20 c.67.1.3 34434 2px6A 316 29.73 1yizA 429 30.52 c.67.1.1 123375 1bykA 255 30.96 c.93.1.1 35706 2qm8A 337 31.10 1v4vA 376 31.30 c.87.1.3 100313 2f4nA 273 31.87 2hy7A 406 31.98 3d02A 303 32.07 2e7jA 371 34.32 2rjoA 332 34.48 1surA 215 34.80 c.26.2.2 31620 3c6qA 311 35.02 1womA 271 35.55 2o3jA 481 35.58 2yvaA 196 35.73 2og1A 286 35.96 3bueA 79 36.80 1m32A 366 38.55 c.67.1.3 78508 3bblA 287 38.69 2dtvA 397 39.62 1u4nA 310 41.11 c.69.1.2 113021 3b34A 891 41.12 1oj7A 408 41.15 e.22.1.2 103971 2cb0A 333 42.20 2iyfA 430 42.75 2h1vA 310 42.92 1zunA 325 43.84 c.26.2.2 125676 1qgoA 264 44.29 c.92.1.2 35596 1tk9A 188 44.44 c.80.1.3 107082 1y37A 304 44.71 2gekA 406 44.83 2douA 376 45.22 2fn9A 290 46.48 1xdwA 331 46.85 1vefA 395 47.30 c.67.1.4 120018 2bfdA 400 47.91 1pjaA 302 48.74 c.69.1.13 94758 2r2nA 425 49.28 1luaA 287 49.44 c.2.1.7,c.58.1.4 78216,78217 2f7bA 233 50.09 1jbwA 428 51.26 c.59.1.2,c.72.2.2 62860,62861 2g7zA 282 51.44 1wm1A 317 51.54 c.69.1.7 109405 1g5bA 221 51.58 d.159.1.3 60261 1kgsA 225 51.91 a.4.6.1,c.23.1.1 68596,68597 2fyfA 398 52.52 1va4A 279 53.38 c.69.1.12 108458 2ay1A 394 53.39 c.67.1.1 34357 1d3gA 367 54.08 c.1.4.1 28600 2zfzA 79 55.21 2o7rA 338 55.29 2ioyA 283 56.67 1jx4A 352 57.38 d.240.1.1,e.8.1.7 90378,90379 2j6pA 152 57.94 2dplA 308 58.78 3beoA 375 60.83 2a2cA 478 60.93 1ihuA 589 61.06 c.37.1.10,c.37.1.10 62394,62395 1lc5A 364 61.57 c.67.1.1 73827 1kvkA 395 61.77 d.14.1.5,d.58.26.3 73060,73061 2fssA 365 62.49 2driA 271 62.64 c.93.1.1 35637 3bwxA 285 62.74 1m6yA 301 62.98 a.60.13.1,c.66.1.23 78716,78717 1xngA 268 64.39 c.26.2.1 122186 1pmmA 466 65.34 c.67.1.6 94901 1h72C 296 65.96 d.14.1.5,d.58.26.1 60712,60713 1o4sA 389 66.91 c.67.1.1 86620 1pzxA 289 66.99 c.119.1.1 95484 2hmhA 152 67.85 1xxaA 78 69.51 d.74.2.1 39700 2i2wA 212 70.76 2ez9A 603 70.89 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2jg2A 422 71.18 1xklA 273 72.15 c.69.1.20 115410 2h0aA 276 73.91 1uqtA 482 75.75 c.87.1.6 99794 1mp9A 198 76.09 d.129.1.1,d.129.1.1 91385,91386 1nriA 306 76.68 c.80.1.3 86123 1a8sA 273 79.06 c.69.1.12 34710 1ajsA 412 79.67 c.67.1.1 34276 1uekA 275 80.36 d.14.1.5,d.58.26.5 88483,88484 1kmkA 406 81.42 c.67.1.3 68696 1jq5A 370 81.51 e.22.1.2 67084 1zoiA 276 84.01 1x7yA 400 84.68 c.36.1.11 114944 1zpdA 568 85.27 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1q6zA 528 85.28 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 3canA 182 85.72 2q71A 356 86.06 2fepA 289 86.83 1x9iA 302 88.56 c.80.1.1 114997 1gsaA 316 88.92 c.30.1.3,d.142.1.1 31718,41477 1tibA 269 89.06 c.69.1.17 34738 1u2eA 289 89.87