# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.11e-22 c.107.1.2 71342 1k20A 310 9.30e-22 c.107.1.1 68027 2eb0A 307 7.99e-20 2qb7A 397 6.57e-17 1wpnA 188 1.16e-13 c.107.1.1 114826 2jejA 358 1.289 d.240.1.1,e.8.1.7 138284,138285 1x6vA 630 1.747 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2zg5A 397 3.989 1bw0A 416 4.166 c.67.1.1 34385 1xi9A 406 4.824 c.67.1.1 115355 1j4aA 333 5.301 c.2.1.4,c.23.12.1 71502,71503 2gb3A 409 5.657 c.67.1.1 134903 2z61A 370 5.867 1j32A 388 6.554 c.67.1.1 77067 2z20A 432 6.638 2dr1A 386 6.923 2o1sA 621 7.233 1d2fA 390 7.469 c.67.1.3 34411 1eg5A 384 8.680 c.67.1.3 34429 2z1yA 397 8.921 1yaaA 412 9.172 c.67.1.1 34280 1jihA 531 9.276 d.240.1.1,e.8.1.7 90374,90375 1c7nA 399 9.619 c.67.1.3 34413 1azwA 313 9.887 c.69.1.7 34658 1v2dA 381 10.34 c.67.1.1 108281 1w7lA 422 10.35 c.67.1.1 109226 2cstA 411 10.59 c.67.1.1 34273 2dtvA 397 10.78 1js3A 486 10.81 c.67.1.6 67215 1oywA 523 11.91 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2q28A 564 12.88 1rrmA 386 13.34 e.22.1.2 105081 2pgnA 589 13.80 1gdeA 389 14.44 c.67.1.1 60456 2o0rA 411 15.33 1m7yA 435 15.46 c.67.1.4 78761 1jftA 340 16.28 a.35.1.5,c.93.1.1 66652,66653 2ez9A 603 17.16 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1gy8A 397 17.36 c.2.1.2 83376 1i36A 264 17.66 a.100.1.8,c.2.1.6 71108,71109 1uk8A 282 18.12 c.69.1.10 107907 1yizA 429 18.51 c.67.1.1 123375 2ihtA 573 18.55 2gekA 406 19.40 2bfdA 400 19.40 1q0rA 298 19.48 c.69.1.28 95508 2bkwA 385 19.52 c.67.1.3 128714 1vdzA 588 19.56 1ars 396 20.63 2douA 376 21.15 1fobA 334 22.94 c.1.8.3 83255 2hoxA 427 23.28 c.67.1.1 136644 1u08A 386 23.62 c.67.1.1 107543 3cwqA 209 24.04 1pjaA 302 24.28 c.69.1.13 94758 2vj8A 611 24.64 1ynuA 473 25.09 c.67.1.4 123762 1ajsA 412 25.46 c.67.1.1 34276 1wvgA 359 25.79 c.2.1.2 121339 1oc2A 348 25.84 c.2.1.2 92765 1wxiA 275 25.92 c.26.2.1 121400 1jbwA 428 26.03 c.59.1.2,c.72.2.2 62860,62861 2yrrA 353 26.20 1lk9A 448 26.28 c.67.1.1 78057 1d3gA 367 26.42 c.1.4.1 28600 1wstA 417 26.96 c.67.1.1 121244 1f0kA 364 27.33 c.87.1.2 35465 7aatA 401 28.15 c.67.1.1 34250 1ihuA 589 28.21 c.37.1.10,c.37.1.10 62394,62395 1zpdA 568 28.31 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1womA 271 29.75 1z5hA 780 30.35 1j09A 468 30.62 a.97.1.1,c.26.1.1 77025,77026 1ozhA 566 30.66 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2rgyA 290 31.60 1p5dX 463 32.21 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2pocA 367 33.67 1m32A 366 34.91 c.67.1.3 78508 1r1dA 247 35.07 c.69.1.29 96813 2e87A 357 35.46 3choA 610 35.64 3brsA 289 37.53 1jkmA 358 39.86 c.69.1.2 34633 2rijA 387 39.87 2r2nA 425 40.82 1vimA 200 42.37 c.80.1.3 100758 3b34A 891 42.95 1r3dA 264 43.99 c.69.1.35 111680 1yqgA 263 45.94 2px6A 316 46.07 1pieA 419 46.30 d.14.1.5,d.58.26.7 94706,94707 1vljA 407 46.78 e.22.1.2 108832 2cz9A 350 47.18 1q6zA 528 47.25 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1v4vA 376 47.54 c.87.1.3 100313 1jmkC 230 48.09 c.69.1.22 71747 2cb0A 333 48.34 1jeoA 180 49.27 c.80.1.3 66611 1xf1A 926 49.96 2hdyA 440 50.20 1qmgA 524 52.75 a.100.1.2,c.2.1.6 18785,30182 1hs6A 611 54.71 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2fssA 365 54.77 1x7yA 400 55.36 c.36.1.11 114944 1oj7A 408 55.41 e.22.1.2 103971 1vlbA 907 55.84 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1h4pA 408 56.38 c.1.8.3 90617 1m3sA 186 56.54 c.80.1.3 78573 1a8yA 367 57.08 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1p3dA 475 57.26 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2csuA 457 58.97 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2e4tA 519 59.84 1x9iA 302 60.52 c.80.1.1 114997 1wqaA 455 61.54 2o1eA 312 61.55 3beoA 375 64.47 2i2wA 212 64.49 3c2uA 538 64.92 1sc6A 404 65.16 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1uu1A 335 65.48 c.67.1.1 99993 1ys7A 233 65.76 a.4.6.1,c.23.1.1 123961,123962 2fuvA 549 65.85 1xdwA 331 66.29 1uokA 558 67.58 b.71.1.1,c.1.8.1 27801,28788 1qw9A 502 67.96 b.71.1.2,c.1.8.3 96466,96467 3bf7A 255 69.25 1v6sA 390 70.24 c.86.1.1 100424 1pswA 348 71.24 c.87.1.7 88287 1u2eA 289 71.78 2rjoA 332 73.97 1udcA 338 74.57 c.2.1.2 29785 2dejA 350 75.33 2cduA 452 75.96 2h1vA 310 76.91 1j1bA 420 79.18 d.144.1.7 90758 1ivnA 190 79.34 c.23.10.5 83719 1zq9A 285 79.57 c.66.1.24 125505 2og1A 286 80.10 1va4A 279 80.23 c.69.1.12 108458 2h5eA 529 80.64 1kgsA 225 80.83 a.4.6.1,c.23.1.1 68596,68597 1uok 558 80.90 1rq2A 382 80.90 c.32.1.1,d.79.2.1 105048,105049 2o3jA 481 81.35 1dxy 333 81.82 1musA 477 81.88 c.55.3.4 79494 1xo1A 291 82.36 a.60.7.1,c.120.1.2 18086,33356 2e18A 257 83.47 2yvaA 196 83.88 1ps9A 671 84.73 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1lc5A 364 84.89 c.67.1.1 73827 2oq2A 261 85.17 2b81A 323 85.82 1qj4A 257 86.11 c.69.1.20 34796 1nrwA 288 86.13 c.108.1.10 86128 2dwcA 433 86.20 2bllA 345 87.52 c.2.1.2 128733 1u4nA 310 88.27 c.69.1.2 113021 1ez4A 318 89.67 c.2.1.5,d.162.1.1 64917,64918 1iugA 352 89.74 c.67.1.3 90699