# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 4.26e-27 c.107.1.2 71342 1k20A 310 9.95e-27 c.107.1.1 68027 2eb0A 307 2.21e-24 2qb7A 397 1.71e-20 1wpnA 188 3.14e-17 c.107.1.1 114826 1c7nA 399 1.423 c.67.1.3 34413 1pieA 419 1.909 d.14.1.5,d.58.26.7 94706,94707 2gb3A 409 3.050 c.67.1.1 134903 2z61A 370 4.124 2jejA 358 4.270 d.240.1.1,e.8.1.7 138284,138285 1rrmA 386 4.533 e.22.1.2 105081 2o1sA 621 4.587 1j4aA 333 4.688 c.2.1.4,c.23.12.1 71502,71503 1m7yA 435 4.705 c.67.1.4 78761 1wstA 417 4.882 c.67.1.1 121244 1d2fA 390 5.701 c.67.1.3 34411 1i36A 264 5.745 a.100.1.8,c.2.1.6 71108,71109 2o0rA 411 5.823 1gdeA 389 5.880 c.67.1.1 60456 2z1yA 397 6.839 2z20A 432 6.998 1q0rA 298 8.093 c.69.1.28 95508 1js3A 486 8.252 c.67.1.6 67215 1wxiA 275 8.284 c.26.2.1 121400 1j32A 388 8.849 c.67.1.1 77067 1xi9A 406 9.112 c.67.1.1 115355 2bkwA 385 9.279 c.67.1.3 128714 2zg5A 397 9.539 1vimA 200 9.725 c.80.1.3 100758 2cstA 411 9.897 c.67.1.1 34273 3cwqA 209 10.39 1w7lA 422 10.56 c.67.1.1 109226 1ynuA 473 10.67 c.67.1.4 123762 3brsA 289 10.86 2rgyA 290 10.89 1jftA 340 11.14 a.35.1.5,c.93.1.1 66652,66653 1azwA 313 11.56 c.69.1.7 34658 1yaaA 412 12.18 c.67.1.1 34280 1r1dA 247 12.18 c.69.1.29 96813 1uk8A 282 12.47 c.69.1.10 107907 2dejA 350 12.61 2cz9A 350 13.30 1ars 396 13.50 2pocA 367 13.62 1jeoA 180 14.93 c.80.1.3 66611 1u08A 386 15.18 c.67.1.1 107543 1f0kA 364 15.55 c.87.1.2 35465 1m3sA 186 17.46 c.80.1.3 78573 1yqgA 263 17.85 1sc6A 404 18.16 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2ez2A 456 18.28 1v2dA 381 18.37 c.67.1.1 108281 2yrrA 353 18.49 1bw0A 416 18.78 c.67.1.1 34385 2px6A 316 18.81 1gy8A 397 19.26 c.2.1.2 83376 2csuA 457 20.64 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3bf7A 255 20.65 1ys7A 233 20.79 a.4.6.1,c.23.1.1 123961,123962 1eg5A 384 20.93 c.67.1.3 34429 1bn7A 294 21.23 c.69.1.8 34677 2dtvA 397 22.64 2bfdA 400 24.35 2e7jA 371 24.40 2dr1A 386 24.64 2hy7A 406 25.48 2df8A 325 25.55 1eluA 390 25.99 c.67.1.3 34434 2p1zA 180 27.04 1wuuA 399 28.42 d.14.1.5,d.58.26.7 114900,114901 2gekA 406 28.63 3bblA 287 28.81 1oj7A 408 29.48 e.22.1.2 103971 1m32A 366 29.84 c.67.1.3 78508 1yizA 429 30.49 c.67.1.1 123375 2r2nA 425 30.56 1womA 271 30.64 1uu1A 335 31.77 c.67.1.1 99993 2og1A 286 31.99 1jmkC 230 32.06 c.69.1.22 71747 2douA 376 32.26 3b34A 891 32.41 1rzuA 485 34.33 c.87.1.8 105140 2z9wA 392 34.98 2e18A 257 35.40 1o4sA 389 36.23 c.67.1.1 86620 1zq9A 285 37.55 c.66.1.24 125505 1m6yA 301 37.63 a.60.13.1,c.66.1.23 78716,78717 1jkmA 358 38.05 c.69.1.2 34633 3c6qA 311 38.23 1jbwA 428 38.67 c.59.1.2,c.72.2.2 62860,62861 1bykA 255 38.80 c.93.1.1 35706 1vljA 407 39.32 e.22.1.2 108832 3d02A 303 39.37 1ajsA 412 39.85 c.67.1.1 34276 2q0oA 236 40.27 2h1vA 310 40.34 2fyfA 398 40.76 1qj4A 257 42.04 c.69.1.20 34796 2cb0A 333 42.73 1lc5A 364 42.99 c.67.1.1 73827 1u4nA 310 43.35 c.69.1.2 113021 2yvaA 196 44.51 1surA 215 44.85 c.26.2.2 31620 2o3jA 481 45.26 1tk9A 188 45.61 c.80.1.3 107082 2h0aA 276 45.93 2jg2A 422 46.08 1kmkA 406 46.12 c.67.1.3 68696 1xdwA 331 46.29 1y37A 304 46.64 2iyfA 430 47.04 1dxy 333 47.35 2rjoA 332 47.85 2f7bA 233 48.80 1v4vA 376 49.05 c.87.1.3 100313 2driA 271 49.92 c.93.1.1 35637 2ay1A 394 50.84 c.67.1.1 34357 1x7yA 400 52.04 c.36.1.11 114944 1va4A 279 52.21 c.69.1.12 108458 1kgsA 225 52.89 a.4.6.1,c.23.1.1 68596,68597 1vefA 395 53.31 c.67.1.4 120018 1d3gA 367 54.93 c.1.4.1 28600 3bueA 79 55.17 2pv7A 298 55.70 1ihuA 589 56.58 c.37.1.10,c.37.1.10 62394,62395 3beoA 375 56.64 1luaA 287 56.71 c.2.1.7,c.58.1.4 78216,78217 1qgoA 264 58.96 c.92.1.2 35596 2ioyA 283 59.22 2fn9A 290 59.23 2q71A 356 59.34 1uqtA 482 59.44 c.87.1.6 99794 2qm8A 337 61.17 1iukA 140 61.75 c.2.1.8 83712 2ipxA 233 62.84 2a2cA 478 63.03 1p5zB 263 63.10 c.37.1.1 87815 2d59A 144 63.43 c.2.1.8 131266 1h72C 296 66.00 d.14.1.5,d.58.26.1 60712,60713 2j6pA 152 66.80 1g5bA 221 66.85 d.159.1.3 60261 1tibA 269 66.91 c.69.1.17 34738 1x9iA 302 67.77 c.80.1.1 114997 1wm1A 317 67.80 c.69.1.7 109405 2zfzA 79 67.90 2dgkA 452 68.34 2fepA 289 69.60 1tqhA 247 70.27 c.69.1.29 107225 2oq2A 261 72.01 1pmmA 466 73.35 c.67.1.6 94901 2q28A 564 74.14 1b5pA 385 74.26 c.67.1.1 90403 1u2eA 289 74.62 2f4nA 273 74.70 1w85B 324 74.94 c.36.1.7,c.48.1.2 114336,114337 1fukA 165 75.38 c.37.1.19 32409 2fssA 365 75.57 1kvkA 395 75.89 d.14.1.5,d.58.26.3 73060,73061 1pjaA 302 78.53 c.69.1.13 94758 2i2wA 212 79.37 1ek6A 348 79.66 c.2.1.2 29800 2dplA 308 79.68 2o7rA 338 80.06 1uwcA 261 81.66 c.69.1.17 100101 2nyiA 195 84.75 1a8sA 273 85.02 c.69.1.12 34710 1wyzA 242 85.41 c.90.1.1 121471 3ce9A 354 89.01 2iksA 293 89.28 1xxaA 78 89.59 d.74.2.1 39700