# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.26e-25 c.107.1.2 71342 1k20A 310 7.19e-25 c.107.1.1 68027 2eb0A 307 2.09e-22 2qb7A 397 2.41e-19 1wpnA 188 2.01e-15 c.107.1.1 114826 1pieA 419 0.9286 d.14.1.5,d.58.26.7 94706,94707 1d2fA 390 1.352 c.67.1.3 34411 1c7nA 399 2.056 c.67.1.3 34413 2jejA 358 2.486 d.240.1.1,e.8.1.7 138284,138285 2o0rA 411 3.100 1ynuA 473 3.750 c.67.1.4 123762 2px6A 316 4.064 2z61A 370 5.843 1m7yA 435 6.114 c.67.1.4 78761 1bw0A 416 6.699 c.67.1.1 34385 2ez2A 456 6.966 1v2dA 381 7.123 c.67.1.1 108281 1pjaA 302 7.404 c.69.1.13 94758 1yaaA 412 8.156 c.67.1.1 34280 1u08A 386 8.310 c.67.1.1 107543 1wstA 417 8.388 c.67.1.1 121244 2z1yA 397 8.419 1gy8A 397 8.902 c.2.1.2 83376 1gdeA 389 9.007 c.67.1.1 60456 1azwA 313 9.240 c.69.1.7 34658 1w7lA 422 9.254 c.67.1.1 109226 1xi9A 406 9.290 c.67.1.1 115355 1oj7A 408 9.788 e.22.1.2 103971 1j32A 388 10.45 c.67.1.1 77067 1sc6A 404 11.42 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1js3A 486 11.43 c.67.1.6 67215 2zg5A 397 11.89 1q0rA 298 12.62 c.69.1.28 95508 1ars 396 13.00 2oq2A 261 13.16 2bkwA 385 13.45 c.67.1.3 128714 1v72A 356 13.57 c.67.1.1 119860 3bf7A 255 13.61 1jkmA 358 13.66 c.69.1.2 34633 1rrmA 386 13.91 e.22.1.2 105081 1y37A 304 14.13 2cz9A 350 14.44 1eg5A 384 14.78 c.67.1.3 34429 2dtvA 397 15.89 2e7jA 371 15.92 2r2nA 425 16.92 1va4A 279 17.29 c.69.1.12 108458 2gb3A 409 17.88 c.67.1.1 134903 2cstA 411 17.93 c.67.1.1 34273 1a8qA 274 18.79 c.69.1.12 34702 2dr1A 386 19.31 2z20A 432 19.54 1i36A 264 19.76 a.100.1.8,c.2.1.6 71108,71109 2pocA 367 20.49 1jftA 340 20.63 a.35.1.5,c.93.1.1 66652,66653 1bn7A 294 20.86 c.69.1.8 34677 2rgyA 290 22.03 1m32A 366 22.58 c.67.1.3 78508 1zoiA 276 24.18 2hoxA 427 24.30 c.67.1.1 136644 1eluA 390 27.08 c.67.1.3 34434 2o1sA 621 27.40 1uu1A 335 27.43 c.67.1.1 99993 3brsA 289 28.45 1j4aA 333 28.77 c.2.1.4,c.23.12.1 71502,71503 2douA 376 28.80 2oatA 439 29.03 c.67.1.4 34452 1wuuA 399 30.95 d.14.1.5,d.58.26.7 114900,114901 1xklA 273 33.33 c.69.1.20 115410 1yqgA 263 33.84 3cwqA 209 34.15 2dejA 350 34.17 1pmmA 466 35.37 c.67.1.6 94901 1wxiA 275 36.07 c.26.2.1 121400 1jihA 531 36.85 d.240.1.1,e.8.1.7 90374,90375 1lk9A 448 37.66 c.67.1.1 78057 1u4nA 310 37.84 c.69.1.2 113021 1r1dA 247 38.35 c.69.1.29 96813 2og1A 286 38.50 2q0oA 236 38.65 1vefA 395 39.13 c.67.1.4 120018 1u2eA 289 40.06 1ek6A 348 40.18 c.2.1.2 29800 2h1vA 310 40.31 1a8sA 273 40.40 c.69.1.12 34710 1b6gA 310 42.02 c.69.1.8 34661 1svvA 359 42.19 c.67.1.1 106054 1vljA 407 42.64 e.22.1.2 108832 1jf9A 408 43.68 c.67.1.3 62931 2gmsA 390 43.91 2f4nA 273 44.74 2bwnA 401 47.45 c.67.1.4 129368 1k92A 455 48.10 c.26.2.1,d.210.1.1 68325,68326 1bykA 255 48.53 c.93.1.1 35706 1jmkC 230 49.53 c.69.1.22 71747 1wm1A 317 49.67 c.69.1.7 109405 3bwnA 391 49.98 1f0kA 364 52.18 c.87.1.2 35465 2dkjA 407 52.34 3c4vA 426 52.98 2csuA 457 53.13 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1kmkA 406 53.53 c.67.1.3 68696 1t8tA 271 54.01 c.37.1.5 106685 1potA 325 54.54 c.94.1.1 35807 2p1zA 180 55.42 2z9wA 392 55.83 1surA 215 58.12 c.26.2.2 31620 1lc5A 364 58.30 c.67.1.1 73827 3bwxA 285 58.35 1o4sA 389 59.02 c.67.1.1 86620 1ys7A 233 59.09 a.4.6.1,c.23.1.1 123961,123962 1qj4A 257 59.15 c.69.1.20 34796 2fn9A 290 59.50 1t3iA 420 59.52 c.67.1.3 106354 2h0aA 276 59.53 1fg7A 356 59.75 c.67.1.1 59819 2yrrA 353 59.97 2c0rA 362 60.95 c.67.1.4 129604 1zq9A 285 61.02 c.66.1.24 125505 1fc4A 401 61.30 c.67.1.4 59760 2e9xC 219 62.07 1rzuA 485 62.94 c.87.1.8 105140 1mj5A 302 63.00 c.69.1.8 91285 2ay1A 394 63.05 c.67.1.1 34357 1yizA 429 63.08 c.67.1.1 123375 2hfsA 332 63.41 1wvgA 359 64.39 c.2.1.2 121339 2f7bA 233 64.39 2q71A 356 65.85 1m6sA 347 65.87 c.67.1.1 78701 1x3mA 415 66.21 c.55.1.2,c.55.1.2 121664,121665 2o7rA 338 67.22 2oqxA 467 68.49 2gs8A 317 68.82 2o3jA 481 69.00 3beoA 375 70.55 1l7aA 318 71.16 c.69.1.25 77772 2r8jA 554 71.45 2oi2A 292 72.55 1x9iA 302 72.87 c.80.1.1 114997 1b6g 310 73.11 1vjoA 393 73.74 c.67.1.3 100827 2pg3A 232 76.60 1womA 271 77.58 1b5pA 385 77.98 c.67.1.1 90403 2fssA 365 78.92 2ipxA 233 79.73 3b34A 891 79.79 1kvkA 395 79.84 d.14.1.5,d.58.26.3 73060,73061 1rkxA 357 80.41 c.2.1.2 97631 1zpdA 568 81.26 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2a2cA 478 82.84 1ajsA 412 83.42 c.67.1.1 34276 2hy7A 406 85.27 1vimA 200 85.48 c.80.1.3 100758 1e4eA 343 85.60 c.30.1.2,d.142.1.1 59221,59222 2fepA 289 85.98 1uk8A 282 87.03 c.69.1.10 107907 1h72C 296 87.82 d.14.1.5,d.58.26.1 60712,60713 1jeoA 180 88.06 c.80.1.3 66611