# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 4.46e-25 c.107.1.2 71342 1k20A 310 2.27e-24 c.107.1.1 68027 2eb0A 307 1.98e-22 2qb7A 397 8.18e-19 1wpnA 188 6.06e-16 c.107.1.1 114826 1d2fA 390 0.6729 c.67.1.3 34411 1pieA 419 0.9557 d.14.1.5,d.58.26.7 94706,94707 1c7nA 399 1.442 c.67.1.3 34413 2o0rA 411 2.574 2jejA 358 2.638 d.240.1.1,e.8.1.7 138284,138285 2z61A 370 4.020 1w7lA 422 4.798 c.67.1.1 109226 1yaaA 412 5.085 c.67.1.1 34280 1ynuA 473 5.427 c.67.1.4 123762 1xi9A 406 5.834 c.67.1.1 115355 1ars 396 6.243 1gdeA 389 6.327 c.67.1.1 60456 1m7yA 435 6.845 c.67.1.4 78761 1rrmA 386 6.979 e.22.1.2 105081 1j32A 388 7.212 c.67.1.1 77067 1i36A 264 7.357 a.100.1.8,c.2.1.6 71108,71109 1oj7A 408 7.512 e.22.1.2 103971 1js3A 486 7.581 c.67.1.6 67215 1bw0A 416 7.890 c.67.1.1 34385 2px6A 316 8.057 2cstA 411 8.236 c.67.1.1 34273 1u08A 386 8.292 c.67.1.1 107543 2bkwA 385 8.475 c.67.1.3 128714 1wstA 417 8.903 c.67.1.1 121244 2cz9A 350 9.416 2o1sA 621 10.11 2z20A 432 10.16 2oq2A 261 10.52 1j4aA 333 10.70 c.2.1.4,c.23.12.1 71502,71503 1v2dA 381 11.38 c.67.1.1 108281 2z1yA 397 11.44 1jkmA 358 13.61 c.69.1.2 34633 1q0rA 298 13.68 c.69.1.28 95508 2pocA 367 14.30 2ez2A 456 14.79 2rgyA 290 15.02 2gs8A 317 15.46 1eg5A 384 15.82 c.67.1.3 34429 2zg5A 397 15.95 1sc6A 404 16.11 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3cwqA 209 16.30 1jftA 340 18.55 a.35.1.5,c.93.1.1 66652,66653 2dejA 350 19.07 3c4vA 426 19.19 3brsA 289 19.93 2z9wA 392 20.24 1y37A 304 20.28 1gy8A 397 20.30 c.2.1.2 83376 1rzuA 485 20.55 c.87.1.8 105140 3bf7A 255 20.84 1uu1A 335 22.54 c.67.1.1 99993 1bn7A 294 22.94 c.69.1.8 34677 1vljA 407 23.33 e.22.1.2 108832 1f0kA 364 23.40 c.87.1.2 35465 2yrrA 353 24.45 1yqgA 263 25.25 2dtvA 397 25.39 2r2nA 425 25.42 1va4A 279 25.71 c.69.1.12 108458 2e7jA 371 26.12 1kmkA 406 26.47 c.67.1.3 68696 1wxiA 275 27.16 c.26.2.1 121400 1v72A 356 27.64 c.67.1.1 119860 1azwA 313 28.23 c.69.1.7 34658 2gb3A 409 28.35 c.67.1.1 134903 1zoiA 276 29.32 1wm1A 317 30.27 c.69.1.7 109405 2dr1A 386 31.11 1kvkA 395 31.30 d.14.1.5,d.58.26.3 73060,73061 1yizA 429 31.35 c.67.1.1 123375 3bblA 287 33.03 2ay1A 394 33.15 c.67.1.1 34357 1nvtA 287 33.48 c.2.1.7,c.58.1.5 86270,86271 1wuuA 399 34.43 d.14.1.5,d.58.26.7 114900,114901 1lc5A 364 34.67 c.67.1.1 73827 1pjaA 302 34.74 c.69.1.13 94758 1zq9A 285 35.34 c.66.1.24 125505 1m32A 366 35.39 c.67.1.3 78508 1r1dA 247 36.11 c.69.1.29 96813 1vjoA 393 37.09 c.67.1.3 100827 2hoxA 427 38.34 c.67.1.1 136644 2gekA 406 39.78 2h1vA 310 41.11 1a8qA 274 41.28 c.69.1.12 34702 1iirA 415 42.17 c.87.1.5 62453 1ajsA 412 44.29 c.67.1.1 34276 2h78A 302 44.54 1m3sA 186 45.36 c.80.1.3 78573 1bykA 255 46.22 c.93.1.1 35706 1wolA 122 46.23 2hfsA 332 47.85 1vimA 200 48.67 c.80.1.3 100758 1zunA 325 50.72 c.26.2.2 125676 2fssA 365 51.41 1u4nA 310 51.51 c.69.1.2 113021 2q0oA 236 52.15 1a8sA 273 52.24 c.69.1.12 34710 1u2eA 289 52.42 2og1A 286 53.94 1dxy 333 55.01 2o3jA 481 55.54 1qj4A 257 56.44 c.69.1.20 34796 2oi2A 292 57.23 3beoA 375 57.57 2a2cA 478 58.69 3b46A 447 59.76 2oatA 439 60.54 c.67.1.4 34452 1v4vA 376 61.24 c.87.1.3 100313 3b34A 891 61.86 1surA 215 62.52 c.26.2.2 31620 2bwnA 401 64.18 c.67.1.4 129368 1ek6A 348 64.46 c.2.1.2 29800 2iuyA 342 65.16 1vefA 395 65.45 c.67.1.4 120018 1o4sA 389 67.20 c.67.1.1 86620 1uk8A 282 67.35 c.69.1.10 107907 2e7xA 150 67.92 1zuwA 272 69.32 1eluA 390 69.50 c.67.1.3 34434 1jeoA 180 69.64 c.80.1.3 66611 2j6iA 364 70.71 1pmmA 466 70.87 c.67.1.6 94901 2fepA 289 71.00 2h0aA 276 71.24 2douA 376 72.69 3clkA 290 73.11 2hufA 393 73.12 1lk9A 448 73.61 c.67.1.1 78057 2fn9A 290 73.96 2qr6A 393 74.42 1svvA 359 75.75 c.67.1.1 106054 2qxfA 482 75.99 2gmsA 390 76.02 1xdwA 331 76.64 3b9oA 440 77.00 3d02A 303 77.39 1qgoA 264 77.84 c.92.1.2 35596 2pg3A 232 78.13 2o7rA 338 78.97 1h72C 296 80.23 d.14.1.5,d.58.26.1 60712,60713 2ahrA 259 80.45 a.100.1.10,c.2.1.6 126775,126776 2driA 271 81.53 c.93.1.1 35637 3c6qA 311 82.17 3bueA 79 82.31 1g5bA 221 83.05 d.159.1.3 60261 1uqtA 482 83.31 c.87.1.6 99794 2ioyA 283 83.73 2hy7A 406 83.76 1x7yA 400 84.08 c.36.1.11 114944 1jmkC 230 84.30 c.69.1.22 71747 2pg9A 337 86.24 2eh6A 375 86.65 1jq5A 370 87.03 e.22.1.2 67084 1ys7A 233 87.98 a.4.6.1,c.23.1.1 123961,123962 3caiA 406 88.89 2dt8A 280 89.72 2p1zA 180 89.73