# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 4.89e-25 c.107.1.2 71342 1k20A 310 1.68e-24 c.107.1.1 68027 2eb0A 307 1.81e-22 2qb7A 397 1.10e-18 1wpnA 188 1.11e-15 c.107.1.1 114826 1d2fA 390 0.7197 c.67.1.3 34411 1pieA 419 0.8867 d.14.1.5,d.58.26.7 94706,94707 1c7nA 399 1.475 c.67.1.3 34413 2o0rA 411 2.315 2jejA 358 2.548 d.240.1.1,e.8.1.7 138284,138285 1oj7A 408 4.049 e.22.1.2 103971 2z61A 370 4.748 2px6A 316 5.115 1rrmA 386 5.254 e.22.1.2 105081 1xi9A 406 5.971 c.67.1.1 115355 1gy8A 397 6.119 c.2.1.2 83376 1ars 396 6.233 2z20A 432 6.275 2cstA 411 6.379 c.67.1.1 34273 1q0rA 298 6.998 c.69.1.28 95508 1ynuA 473 7.369 c.67.1.4 123762 1m7yA 435 7.911 c.67.1.4 78761 1gdeA 389 8.156 c.67.1.1 60456 2ez2A 456 8.337 2cz9A 350 9.180 1j32A 388 9.613 c.67.1.1 77067 1v2dA 381 9.873 c.67.1.1 108281 1sc6A 404 10.10 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1jkmA 358 11.00 c.69.1.2 34633 1i36A 264 11.36 a.100.1.8,c.2.1.6 71108,71109 1yaaA 412 12.06 c.67.1.1 34280 1u08A 386 12.13 c.67.1.1 107543 1wstA 417 12.57 c.67.1.1 121244 3bf7A 255 12.58 1bw0A 416 12.65 c.67.1.1 34385 1w7lA 422 13.09 c.67.1.1 109226 2o1sA 621 13.23 2z1yA 397 14.59 2rgyA 290 14.64 2bkwA 385 15.15 c.67.1.3 128714 1eg5A 384 15.39 c.67.1.3 34429 1jftA 340 15.40 a.35.1.5,c.93.1.1 66652,66653 1j4aA 333 15.41 c.2.1.4,c.23.12.1 71502,71503 1wxiA 275 15.50 c.26.2.1 121400 1y37A 304 16.10 1azwA 313 16.39 c.69.1.7 34658 1va4A 279 16.69 c.69.1.12 108458 2dejA 350 16.91 1js3A 486 16.93 c.67.1.6 67215 1pjaA 302 17.36 c.69.1.13 94758 1a8qA 274 18.40 c.69.1.12 34702 1wm1A 317 18.98 c.69.1.7 109405 1u2eA 289 19.59 2z9wA 392 19.78 2oq2A 261 19.92 3c4vA 426 20.09 3brsA 289 20.36 1v72A 356 20.56 c.67.1.1 119860 2zg5A 397 20.58 1yqgA 263 21.14 1bn7A 294 21.23 c.69.1.8 34677 1vljA 407 21.32 e.22.1.2 108832 2pocA 367 21.57 3cwqA 209 22.87 1f0kA 364 24.55 c.87.1.2 35465 1kmkA 406 25.91 c.67.1.3 68696 1wuuA 399 26.03 d.14.1.5,d.58.26.7 114900,114901 2og1A 286 26.31 2gb3A 409 26.49 c.67.1.1 134903 1zoiA 276 27.91 1qj4A 257 28.83 c.69.1.20 34796 2gs8A 317 29.35 1uu1A 335 32.06 c.67.1.1 99993 1ek6A 348 32.70 c.2.1.2 29800 1a8sA 273 33.68 c.69.1.12 34710 2gekA 406 34.97 1uk8A 282 35.12 c.69.1.10 107907 1vimA 200 35.64 c.80.1.3 100758 2dtvA 397 35.71 1u4nA 310 36.29 c.69.1.2 113021 2ay1A 394 37.45 c.67.1.1 34357 1wolA 122 37.68 1bykA 255 37.74 c.93.1.1 35706 1zunA 325 39.35 c.26.2.2 125676 2h78A 302 39.57 1r1dA 247 39.96 c.69.1.29 96813 2dr1A 386 40.02 2r2nA 425 40.18 2h0aA 276 40.22 2pg3A 232 40.74 1surA 215 40.86 c.26.2.2 31620 1zq9A 285 40.94 c.66.1.24 125505 1m3sA 186 41.30 c.80.1.3 78573 2e7jA 371 43.24 3bblA 287 43.78 1ajsA 412 44.16 c.67.1.1 34276 1lc5A 364 46.67 c.67.1.1 73827 1pmmA 466 47.02 c.67.1.6 94901 2yrrA 353 47.69 1jeoA 180 48.66 c.80.1.3 66611 1qgoA 264 48.76 c.92.1.2 35596 1svvA 359 48.98 c.67.1.1 106054 1vjoA 393 49.71 c.67.1.3 100827 1rzuA 485 51.00 c.87.1.8 105140 2douA 376 51.49 2p1zA 180 51.51 1v4vA 376 53.07 c.87.1.3 100313 1potA 325 54.94 c.94.1.1 35807 1b6gA 310 55.15 c.69.1.8 34661 2iyfA 430 55.26 3b34A 891 55.72 1m32A 366 56.84 c.67.1.3 78508 2qvbA 297 57.02 1g5bA 221 57.42 d.159.1.3 60261 1vefA 395 57.45 c.67.1.4 120018 2o3jA 481 57.46 1jq5A 370 57.80 e.22.1.2 67084 2e18A 257 58.00 1o4sA 389 58.06 c.67.1.1 86620 2f7bA 233 58.14 2h1vA 310 59.68 2q0oA 236 59.75 2gmsA 390 59.86 2hoxA 427 60.04 c.67.1.1 136644 1b6g 310 61.29 2fssA 365 62.10 2csuA 457 62.29 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2o7rA 338 62.31 2dt8A 280 62.68 2fn9A 290 62.81 2oatA 439 63.18 c.67.1.4 34452 3clkA 290 63.44 2q71A 356 63.62 1wvgA 359 63.76 c.2.1.2 121339 2pv7A 298 64.38 2hy7A 406 65.26 3bwnA 391 65.27 2bfdA 400 67.20 3beoA 375 68.54 1womA 271 69.67 1x7yA 400 71.27 c.36.1.11 114944 2iksA 293 71.78 1yizA 429 71.85 c.67.1.1 123375 1jmkC 230 72.77 c.69.1.22 71747 2e9xC 219 73.97 2g7zA 282 75.00 1xklA 273 75.91 c.69.1.20 115410 3d02A 303 77.23 2ioyA 283 78.01 1kvkA 395 78.16 d.14.1.5,d.58.26.3 73060,73061 1ys7A 233 78.41 a.4.6.1,c.23.1.1 123961,123962 3bwxA 285 78.70 2bwnA 401 79.54 c.67.1.4 129368 1k07A 263 80.10 d.157.1.1 77218 1wyzA 242 80.80 c.90.1.1 121471 1eluA 390 81.56 c.67.1.3 34434 2driA 271 81.81 c.93.1.1 35637 2fepA 289 82.43 2a2cA 478 84.05 1lk9A 448 84.79 c.67.1.1 78057 1sur 215 85.23 1iukA 140 85.35 c.2.1.8 83712 1uqtA 482 88.88 c.87.1.6 99794