# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 9.13e-27 c.107.1.2 71342 1k20A 310 1.67e-25 c.107.1.1 68027 2eb0A 307 4.60e-22 2qb7A 397 1.61e-20 1wpnA 188 5.04e-17 c.107.1.1 114826 2cb0A 333 1.783 2o0rA 411 2.078 2df8A 325 2.512 2pocA 367 3.213 1v2dA 381 3.832 c.67.1.1 108281 1yqgA 263 5.787 2amlA 373 6.076 2z1yA 397 6.247 3brsA 289 6.706 3bf7A 255 7.258 2oq2A 261 7.367 2rgyA 290 8.349 2qruA 274 8.469 2qvcA 313 9.022 1wy5A 317 9.555 c.26.2.5,d.229.1.1 121428,121429 1r1dA 247 10.76 c.69.1.29 96813 1u08A 386 11.14 c.67.1.1 107543 8abp 306 11.33 1rrmA 386 11.51 e.22.1.2 105081 2fn9A 290 12.23 2e5fA 325 15.16 1hyhA 309 17.07 c.2.1.5,d.162.1.1 30150,42117 2gwhA 298 18.00 1bykA 255 18.13 c.93.1.1 35706 2dtvA 397 18.70 2q14A 410 19.20 3bkxA 275 19.44 2ocgA 254 20.24 1x9iA 302 21.00 c.80.1.1 114997 1womA 271 21.88 1lldA 319 22.07 c.2.1.5,d.162.1.1 30177,42144 2odaA 196 22.26 2ioyA 283 23.33 3c4vA 426 23.41 1vj7A 393 23.87 a.211.1.1,d.218.1.8 100801,100802 1c4xA 285 24.41 c.69.1.10 34684 1xngA 268 24.73 c.26.2.1 122186 2driA 271 27.18 c.93.1.1 35637 1jmkC 230 27.66 c.69.1.22 71747 2h3hA 313 28.26 8abpA 306 28.33 c.93.1.1 35647 2iw1A 374 30.62 c.87.1.8 137738 3c6qA 311 31.28 2fepA 289 31.30 1wxiA 275 31.51 c.26.2.1 121400 2cduA 452 31.62 1kqpA 271 32.07 c.26.2.1 72883 2iksA 293 32.87 3d02A 303 33.16 1eq2A 310 35.67 c.2.1.2 29814 1eo1A 124 36.10 c.55.5.1 33739 1moq 368 36.63 2c81A 418 36.69 1t2dA 322 37.52 c.2.1.5,d.162.1.1 99084,99085 2px6A 316 37.58 2ewdA 317 37.63 2jejA 358 38.31 d.240.1.1,e.8.1.7 138284,138285 1guzA 310 39.18 c.2.1.5,d.162.1.1 65586,65587 2gqwA 408 39.18 2iyfA 430 39.25 1azwA 313 42.93 c.69.1.7 34658 1rrvA 416 43.33 c.87.1.5 105083 3bfxA 296 43.52 1ez4A 318 44.42 c.2.1.5,d.162.1.1 64917,64918 2fnuA 375 44.42 c.67.1.4 133831 2yrrA 353 44.58 2rjoA 332 44.92 1c7nA 399 45.27 c.67.1.3 34413 1w7lA 422 45.30 c.67.1.1 109226 2fqxA 318 47.58 1ars 396 47.60 6ldhA 329 48.69 c.2.1.5,d.162.1.1 30161,42128 2cstA 411 48.85 c.67.1.1 34273 1y1lA 124 50.64 c.44.1.1 116341 3bk2A 562 51.37 3d1cA 369 51.48 3cklA 298 52.65 1brtA 277 54.67 c.69.1.12 34699 1j1iA 296 55.47 c.69.1.10 83977 2o20A 332 56.95 2dkjA 407 57.04 2c29D 337 57.16 2dpyA 438 57.49 1hp1A 516 58.80 d.114.1.1,d.159.1.2 70976,70977 2qu7A 288 59.93 2ahrA 259 60.01 a.100.1.10,c.2.1.6 126775,126776 2z61A 370 60.17 1d2fA 390 61.26 c.67.1.3 34411 2zg5A 397 62.05 1gca 309 62.20 1lc5A 364 62.74 c.67.1.1 73827 2rhwA 283 62.78 1m7yA 435 63.20 c.67.1.4 78761 1k07A 263 64.22 d.157.1.1 77218 1vjgA 218 64.94 c.23.10.6 100810 1g5bA 221 65.80 d.159.1.3 60261 1oc2A 348 65.83 c.2.1.2 92765 2o8nA 265 66.77 1miwA 404 67.16 a.173.1.1,d.218.1.4 79162,79163 1aukA 489 67.58 c.76.1.2 35030 1zjjA 263 68.90 1dljA 402 69.29 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1uk8A 282 69.45 c.69.1.10 107907 1ajsA 412 69.67 c.67.1.1 34276 3c0wA 235 73.22 2oblA 347 73.62 1r7mA 235 73.90 d.95.2.1,d.95.2.1 111713,111714 2e85A 159 74.02 2hldD 478 74.26 2aqjA 538 75.57 1wviA 257 75.97 c.108.1.14 114915 1pswA 348 76.51 c.87.1.7 88287 1j32A 388 77.50 c.67.1.1 77067 2a2cA 478 78.01 1vmeA 410 78.59 c.23.5.1,d.157.1.3 108893,108894 1jftA 340 78.72 a.35.1.5,c.93.1.1 66652,66653 1s3iA 310 80.14 b.46.1.1,c.65.1.1 98435,98436 2q0xA 335 81.25 2yysA 286 81.62 1m6iA 493 84.19 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1x2gA 337 84.88 2a3nA 355 85.05 1pujA 282 86.65 c.37.1.8 88294 2p1zA 180 86.99 1k92A 455 87.04 c.26.2.1,d.210.1.1 68325,68326 2gmsA 390 87.53 2fwrA 472 88.13 c.37.1.19,c.37.1.19 134253,134254 1o69A 394 88.68 c.67.1.4 92560 3c96A 415 89.49