# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.66e-26 c.107.1.2 71342 1k20A 310 5.24e-25 c.107.1.1 68027 2eb0A 307 2.16e-22 2qb7A 397 1.06e-18 1wpnA 188 2.38e-16 c.107.1.1 114826 2o0rA 411 2.545 1w7lA 422 4.469 c.67.1.1 109226 2z61A 370 4.726 2oq2A 261 5.108 1w23A 360 5.645 c.67.1.4 114088 2c0rA 362 6.074 c.67.1.4 129604 3bf7A 255 6.905 2rgyA 290 7.968 1d2fA 390 8.112 c.67.1.3 34411 2pocA 367 9.302 1m7yA 435 9.372 c.67.1.4 78761 2p1zA 180 9.500 1hyhA 309 9.610 c.2.1.5,d.162.1.1 30150,42117 1bykA 255 9.651 c.93.1.1 35706 1u08A 386 9.875 c.67.1.1 107543 2jejA 358 10.74 d.240.1.1,e.8.1.7 138284,138285 3beoA 375 11.63 1yqgA 263 11.63 1rrmA 386 11.71 e.22.1.2 105081 2bkwA 385 11.76 c.67.1.3 128714 2dr1A 386 12.08 3c4vA 426 12.32 1gdeA 389 12.59 c.67.1.1 60456 1c7nA 399 13.14 c.67.1.3 34413 1yizA 429 13.18 c.67.1.1 123375 8abp 306 13.45 3brsA 289 13.64 2z20A 432 13.64 2rjoA 332 14.14 2fn9A 290 14.67 1j32A 388 15.61 c.67.1.1 77067 1xi9A 406 16.71 c.67.1.1 115355 2gb3A 409 17.73 c.67.1.1 134903 2ewdA 317 18.13 2fnuA 375 18.52 c.67.1.4 133831 1v73A 342 18.53 2z1yA 397 18.62 2fvyA 309 19.50 c.93.1.1 134227 2qvcA 313 21.39 2yrrA 353 21.88 2fepA 289 22.28 1yzyA 413 22.39 c.146.1.1 124292 1ez4A 318 22.58 c.2.1.5,d.162.1.1 64917,64918 1e4eA 343 23.61 c.30.1.2,d.142.1.1 59221,59222 1gca 309 24.88 1vimA 200 24.94 c.80.1.3 100758 3d02A 303 25.00 1wstA 417 25.26 c.67.1.1 121244 2gmsA 390 25.27 2dtvA 397 25.36 2zg5A 397 25.45 2px6A 316 25.50 1wy5A 317 25.82 c.26.2.5,d.229.1.1 121428,121429 1uu1A 335 25.85 c.67.1.1 99993 1v2dA 381 26.52 c.67.1.1 108281 1vj7A 393 26.69 a.211.1.1,d.218.1.8 100801,100802 2e85A 159 26.90 2cb0A 333 27.09 1i36A 264 27.54 a.100.1.8,c.2.1.6 71108,71109 1m32A 366 28.66 c.67.1.3 78508 1o4sA 389 28.70 c.67.1.1 86620 6ldhA 329 29.21 c.2.1.5,d.162.1.1 30161,42128 1kmkA 406 29.62 c.67.1.3 68696 3cvjA 243 30.38 1vdmA 153 30.41 c.61.1.1 119994 8abpA 306 30.84 c.93.1.1 35647 1jmkC 230 31.14 c.69.1.22 71747 2cduA 452 31.30 2qvbA 297 31.40 2pl5A 366 31.41 2gekA 406 31.62 2ioyA 283 31.96 3bblA 287 32.27 2ocgA 254 32.44 2iksA 293 33.10 1t2dA 322 33.55 c.2.1.5,d.162.1.1 99084,99085 1pmmA 466 33.95 c.67.1.6 94901 1jf9A 408 33.98 c.67.1.3 62931 1guzA 310 34.22 c.2.1.5,d.162.1.1 65586,65587 2driA 271 34.80 c.93.1.1 35637 1t8tA 271 35.30 c.37.1.5 106685 1jixA 351 35.38 c.87.1.1 63081 2amlA 373 35.61 1t70A 255 35.98 d.159.1.9 112275 1eg5A 384 36.07 c.67.1.3 34429 1gudA 288 36.08 c.93.1.1 83326 1y7tA 327 36.12 c.2.1.5,d.162.1.1 122718,122719 1f0kA 364 37.46 c.87.1.2 35465 1c4xA 285 37.51 c.69.1.10 34684 2cz9A 350 37.97 2ahrA 259 39.69 a.100.1.10,c.2.1.6 126775,126776 3ck2A 176 39.78 2df8A 325 40.06 1j1iA 296 40.55 c.69.1.10 83977 1womA 271 41.72 1v4vA 376 43.68 c.87.1.3 100313 1ars 396 43.74 1k92A 455 44.17 c.26.2.1,d.210.1.1 68325,68326 1wxiA 275 46.68 c.26.2.1 121400 1zunA 325 47.45 c.26.2.2 125676 1pzgA 331 52.64 c.2.1.5,d.162.1.1 95425,95426 2iyfA 430 52.76 1xklA 273 53.21 c.69.1.20 115410 2dkjA 407 53.24 1vp4A 425 54.86 c.67.1.1 113935 2hy7A 406 55.72 3tglA 269 56.12 c.69.1.17 34733 2yvaA 196 56.75 2ax3A 502 56.95 c.72.1.4,c.104.1.1 127477,127478 2hufA 393 57.50 1lldA 319 59.43 c.2.1.5,d.162.1.1 30177,42144 1tk9A 188 61.01 c.80.1.3 107082 1vljA 407 61.71 e.22.1.2 108832 3c6qA 311 61.77 2g5cA 281 61.90 a.100.1.12,c.2.1.6 134646,134647 1mdoA 393 63.76 c.67.1.4 79013 2p8jA 209 64.72 2douA 376 64.74 2ez9A 603 65.04 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2psdA 318 65.94 2dc1A 236 66.02 3ctpA 330 67.12 2o20A 332 67.90 1m3sA 186 69.62 c.80.1.3 78573 2qruA 274 70.01 1js3A 486 70.46 c.67.1.6 67215 1nhsA 447 70.78 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2fyfA 398 71.61 3cloA 258 72.13 1qj4A 257 75.51 c.69.1.20 34796 2e3jA 356 76.30 1vjoA 393 76.57 c.67.1.3 100827 3bk2A 562 76.64 1oj7A 408 78.84 e.22.1.2 103971 2hmvA 144 79.18 c.2.1.9 136615 2q28A 564 79.44 1a8sA 273 80.40 c.69.1.12 34710 2h78A 302 81.04 2dy0A 190 82.73 1brtA 277 83.25 c.69.1.12 34699 1nriA 306 83.81 c.80.1.3 86123 1azwA 313 85.88 c.69.1.7 34658 1kqpA 271 86.69 c.26.2.1 72883 1zejA 293 87.35 2o2iA 300 87.39 2ez2A 456 87.73 2o4cA 380 88.42 1ynuA 473 88.68 c.67.1.4 123762