# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 8.54e-10 c.107.1.2 71342 1k20A 310 9.11e-09 c.107.1.1 68027 2eb0A 307 1.74e-07 2qb7A 397 2.80e-06 1wpnA 188 2.78e-05 c.107.1.1 114826 1iowA 306 3.205 c.30.1.2,d.142.1.1 31713,41481 1gdeA 389 4.637 c.67.1.1 60456 2c81A 418 5.589 2i87A 364 6.962 2axqA 467 7.747 1v2dA 381 8.056 c.67.1.1 108281 2fb9A 322 8.112 1ygyA 529 9.251 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1sxjC 340 10.17 a.80.1.1,c.37.1.20 106085,106086 1uu1A 335 10.51 c.67.1.1 99993 1oc2A 348 10.57 c.2.1.2 92765 1js3A 486 10.93 c.67.1.6 67215 1qz9A 416 11.11 c.67.1.3 96621 1iow 306 11.38 1qmgA 524 11.40 a.100.1.2,c.2.1.6 18785,30182 1kmkA 406 12.41 c.67.1.3 68696 1fc4A 401 12.49 c.67.1.4 59760 2dtvA 397 12.91 2p4hX 322 12.99 1o69A 394 13.11 c.67.1.4 92560 2uuuA 584 13.44 1up7A 417 13.76 c.2.1.5,d.162.1.2 113374,113375 1mldA 314 14.00 c.2.1.5,d.162.1.1 30122,42089 2cmd 312 14.10 1ihoA 283 14.11 c.26.1.4 62390 2dejA 350 14.39 2z1yA 397 14.49 2cmdA 312 14.50 c.2.1.5,d.162.1.1 30135,42102 1ehiA 377 14.57 c.30.1.2,d.142.1.1 31716,41484 1p5dX 463 16.23 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2c29D 337 16.26 1jf9A 408 17.10 c.67.1.3 62931 1n2eA 300 17.59 c.26.1.4 85268 1v8fA 276 17.72 c.26.1.4 100503 2r2nA 425 18.18 2cz9A 350 18.93 2z1mA 345 19.09 2zdhA 319 20.68 1uc8A 280 21.63 c.30.1.6,d.142.1.7 99165,99166 2z20A 432 23.31 1b5pA 385 23.39 c.67.1.1 90403 3bh1A 507 23.55 1lldA 319 24.18 c.2.1.5,d.162.1.1 30177,42144 1j32A 388 24.72 c.67.1.1 77067 1hyhA 309 24.74 c.2.1.5,d.162.1.1 30150,42117 1yizA 429 24.92 c.67.1.1 123375 1yoeA 322 25.34 1ynuA 473 25.39 c.67.1.4 123762 2yrxA 451 26.05 3bn1A 373 26.11 2o0rA 411 26.55 1m7yA 435 26.73 c.67.1.4 78761 2fnuA 375 27.24 c.67.1.4 133831 1ks9A 291 27.31 a.100.1.7,c.2.1.6 68857,68858 1fg7A 356 27.42 c.67.1.1 59819 2hufA 393 28.00 1v72A 356 28.05 c.67.1.1 119860 2ordA 397 29.85 1bw0A 416 30.02 c.67.1.1 34385 1gc0A 398 30.55 c.67.1.3 70168 2ewdA 317 30.89 1aquA 297 31.05 c.37.1.5 31942 1w7lA 422 31.67 c.67.1.1 109226 1o4sA 389 31.77 c.67.1.1 86620 2vapA 364 31.88 1cjcA 460 32.58 c.3.1.1,c.4.1.1 30319,30604 1a5zA 319 32.62 c.2.1.5,d.162.1.1 30181,42148 1m65A 245 32.63 c.6.3.1 84847 1pswA 348 32.93 c.87.1.7 88287 1dv2A 452 33.13 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1uxjA 309 33.53 c.2.1.5,d.162.1.1 108112,108113 2o7cA 398 33.63 1m32A 366 34.06 c.67.1.3 78508 2b69A 343 34.29 c.2.1.2 127974 3caiA 406 34.62 1lc5A 364 35.00 c.67.1.1 73827 1w5fA 353 36.88 c.32.1.1,d.79.2.1 114247,114248 2pzmA 330 37.26 2dr1A 386 38.19 2dy1A 665 38.71 2dkaA 544 39.16 2zg5A 397 39.38 1e4eA 343 40.34 c.30.1.2,d.142.1.1 59221,59222 3clkA 290 41.36 3bfxA 296 42.02 1xi9A 406 42.16 c.67.1.1 115355 1g3mA 294 42.19 c.37.1.5 83268 1dv1A 449 42.53 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3brsA 289 42.58 1cs1A 386 43.37 c.67.1.3 34399 2napA 723 43.80 b.52.2.2,c.81.1.1 26926,35334 1t4bA 367 43.85 c.2.1.3,d.81.1.1 106406,106407 1t2aA 375 44.10 c.2.1.2 99078 2pvpA 367 44.25 1kl1A 419 44.58 c.67.1.4 72663 1kjqA 391 45.21 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2fuvA 549 45.52 2q7wA 396 47.48 2yrrA 353 48.15 1bs0A 384 48.70 c.67.1.4 34490 1u08A 386 49.62 c.67.1.1 107543 2gb3A 409 49.62 c.67.1.1 134903 1gpmA 525 49.89 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2oatA 439 51.23 c.67.1.4 34452 1irxA 523 52.05 a.97.1.2,c.26.1.1 71378,71379 2pocA 367 52.25 2pb2A 420 52.41 1oj7A 408 52.44 e.22.1.2 103971 2r6r1 338 53.67 2gwhA 298 54.03 2iv2X 715 54.56 b.52.2.2,c.81.1.1 137714,137715 2iyfA 430 56.53 1vknA 351 56.83 c.2.1.3,d.81.1.1 108676,108677 2ozpA 345 56.88 3cklA 298 57.34 1r6dA 337 57.45 c.2.1.2 97148 2ez2A 456 57.54 2yy7A 312 57.78 1m6sA 347 57.83 c.67.1.1 78701 1jq5A 370 57.84 e.22.1.2 67084 2masA 314 58.00 c.70.1.1 34810 2p8uA 478 58.44 2gnoA 305 59.87 a.80.1.1,c.37.1.20 135414,135415 3b8xA 390 60.56 1d2fA 390 60.59 c.67.1.3 34411 1b9hA 388 60.77 c.67.1.4 34488 2a84A 300 60.98 c.26.1.4 126389 2blnA 305 61.48 b.46.1.1,c.65.1.1 128734,128735 1t8tA 271 61.52 c.37.1.5 106685 3bmaA 407 61.67 2c7yA 404 62.04 2g17A 337 62.83 c.2.1.3,d.81.1.1 134512,134513 1y8qB 640 62.99 1bg6 359 63.34 2aefA 234 63.80 1t2dA 322 64.46 c.2.1.5,d.162.1.1 99084,99085 1vjoA 393 65.91 c.67.1.3 100827 1yb4A 295 67.36 1rrmA 386 67.66 e.22.1.2 105081 1q8fA 313 67.75 c.70.1.1 96203 1ff9A 450 68.24 c.2.1.3,d.81.1.2 30039,39954 1svvA 359 68.44 c.67.1.1 106054 2p6pA 384 70.22 2po3A 424 70.41 1pq4A 291 71.56 c.92.2.2 94995 1yjsA 419 71.72 c.67.1.4 123461 2f82A 450 72.03 2v7pA 310 72.08 2imfA 203 72.21 1o6zA 303 73.05 c.2.1.5,d.162.1.1 81107,81108 1yqgA 263 73.75 1e5eA 404 73.81 c.67.1.3 59265 2cvzA 289 74.90 a.100.1.1,c.2.1.6 130890,130891 2g39A 497 75.40 c.124.1.2,c.124.1.2 134553,134554 2c5aA 379 75.40 c.2.1.2 129894 2cunA 410 75.98 1ls6A 295 76.84 c.37.1.5 91115 1ta9A 450 78.26 2qytA 317 78.33 1wyuA 438 78.59 c.67.1.7 121452 2c40A 312 79.46 2f7lA 455 79.95 1ni5A 433 80.60 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1eluA 390 81.76 c.67.1.3 34434 1h72C 296 84.54 d.14.1.5,d.58.26.1 60712,60713 1ibjA 464 84.54 c.67.1.3 62162 1y8qA 346 85.39 1qf5A 431 87.49 c.37.1.10 32212 1i6lA 328 87.64 c.26.1.1 66041 1sffA 426 88.19 c.67.1.4 105482 1iugA 352 88.88 c.67.1.3 90699 1yi8A 351 89.22