# List of top-scoring protein chains for T0457.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ir6A	424	1.27e-31	c.107.1.2	71342
2hawA	309	4.03e-28	c.107.1.1	136299
1i74A	309	4.84e-27	c.107.1.1	61867
2iw4A	309	1.06e-26		
1wppA	311	9.84e-26	c.107.1.1	114828
2enxA	310	1.17e-25		
1k20A	310	2.01e-25	c.107.1.1	68027
1wpnA	188	2.34e-24	c.107.1.1	114826
2eb0A	307	3.32e-24		
2qb7A	397	9.17e-13		
1pffA	331	2.342	c.67.1.3	104143
2a9gA	418	8.206	d.126.1.4	126435
2ebdA	309	9.614		
1i1qA	520	9.935	d.161.1.1	61543
1p9nA	170	10.13	c.37.1.10	87997
2pn1A	331	10.14		
1np6A	174	10.84	c.37.1.10	85954
2abrA	418	10.99	d.126.1.4	126530
2aafA	418	11.48	d.126.1.4	126471
1xxlA	239	15.47	c.66.1.41	116203
2aciA	418	15.96	d.126.1.4	126551
1pu3A	105	18.09	d.5.1.1	95122
1texA	287	18.33	c.37.1.5	106818
2p9fA	177	18.44		
1rxxA	421	18.78	d.126.1.4	98061
1oncA	104	18.90	d.5.1.1	37278
2enuA	177	20.12		
2gmkA	104	20.34		
3bilA	348	21.40		
2pa0A	177	21.54		
2okkA	497	21.60		
1yv7A	102	22.44		
1yv4A	104	22.57		
2e85A	159	23.27		
2i8lA	156	23.27		
2enwA	177	23.34		
1vagA	420	24.45	d.174.1.1	108469
1ywfA	296	24.83	c.45.1.5	124144
2p79A	177	25.35		
1zujA	179	25.87	a.25.1.1	125672
2ekzA	177	26.23		
2p30A	177	26.27		
1v37A	177	26.38	c.60.1.1	113497
2ekbA	177	26.55		
2p6oA	177	26.71		
1hv8A	367	26.82	c.37.1.19,c.37.1.19	32405,32406
2p2yA	177	27.01		
2p6mA	177	27.24		
2p78A	177	28.13		
2oauA	306	29.15	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
2owdA	177	29.25		
1p32A	209	29.38	d.25.1.1	38379
2p75A	177	29.57		
1p6kA	421	30.20	d.174.1.1	94177
1p6iA	421	30.21	d.174.1.1	94173
1c4oA	664	30.51	c.37.1.19,c.37.1.19	32415,32416
1d0cA	444	30.73	d.174.1.1	64769
2uulH	172	30.83		
1d2mA	665	31.05	c.37.1.19,c.37.1.19	32417,32418
2fm4A	128	31.55	c.8.1.1	133760
2eoaA	177	31.69		
2p77A	177	32.54		
2p9yA	177	33.51		
1om4A	422	33.79	d.174.1.1	87067
2p2zA	177	34.97		
1mmvA	419	35.14	d.174.1.1	91317
1v10A	521	35.61	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
2bghA	421	35.94		
2oweA	177	37.59		
2g6jA	420	38.78		
1zzqA	420	39.32	d.174.1.1	125914
2g6mA	420	39.32	d.174.1.1	134711
1h4bA	84	39.47	a.39.1.10	90608
2p9zA	177	39.82		
1zzuA	420	40.28		
1idjA	359	40.73	b.80.1.2	28026
1m9mA	415	42.92	d.174.1.1	74595
1ud0A	113	42.98	a.8.4.1	99198
1xdiA	499	43.84	c.3.1.5,d.87.1.1	115160,115161
1c07A	95	43.88	a.39.1.6	17337
2ij9A	219	45.11	c.73.1.3	137463
1sqhA	312	46.02	d.108.1.5	98966
2ozvA	260	46.76		
3bewA	271	47.03		
3nosA	427	48.64	d.174.1.1	42520
1xx7A	184	49.35	a.211.1.1	116143
3bevA	274	50.11		
2an0A	361	50.18		
2fc2A	363	50.96		
2hd1A	326	51.17	a.211.1.2	136338
2fc1A	361	52.26	d.174.1.1	133261
2amoA	362	53.69		
2dsjA	423	53.75		
2yy2A	333	54.12		
2rdeA	251	54.43		
1r4wA	226	55.34	c.47.1.13	97050
1yzxA	226	55.87		
1s1iF	162	56.37	i.1.1.1	105180
1s20A	340	56.88	c.122.1.1	98356
3caiA	406	60.62		
1uwdA	103	61.37	d.52.8.2	113447
1m7vA	363	62.81	d.174.1.1	78748
1ajsA	412	63.32	c.67.1.1	34276
2i2wA	212	63.91		
2iswA	323	64.40		
1u2eA	289	64.94		
2di4A	238	65.56	a.269.1.1	131522
1k38A	254	65.95	e.3.1.1	84303
3c1yA	377	66.03		
1bsvA	321	68.01	c.2.1.2	29809
1e6uA	321	69.66	c.2.1.2	29805
2an2A	360	70.78		
2f8mA	244	73.08		
1ik9A	213	74.80	b.59.1.1,h.1.11.1	66176,66177
1udeA	195	76.19	b.40.5.1	99208
2g6pA	304	76.20		
1q90B	215	76.88	f.21.1.2	96241
1bwsA	321	78.18	c.2.1.2	29812
1vhrA	184	78.51	c.45.1.1	32651
2ohgA	264	81.55		
2ejaA	338	82.39		
2adcA	229	82.58	d.58.7.1,d.58.7.1	126582,126583
1zztA	416	85.28		
1q2oA	416	87.33	d.174.1.1	95632
2g6oA	416	87.73	d.174.1.1	134715
1nxuA	333	88.49	c.122.1.1	86389
2ekcA	262	88.66		
2z36A	413	88.74		
1mi4A	427	89.37	d.68.2.2	79141
1e7rA	321	89.95	c.2.1.2	29808