# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 9.65e-26 c.107.1.1 68027 1i74A 309 2.84e-24 c.107.1.1 61867 1ir6A 424 9.91e-24 c.107.1.2 71342 2eb0A 307 8.46e-23 2qb7A 397 5.87e-17 1wpnA 188 1.44e-15 c.107.1.1 114826 2rgyA 290 1.393 3cs3A 277 1.425 2fepA 289 1.609 1jeoA 180 1.808 c.80.1.3 66611 2driA 271 3.015 c.93.1.1 35637 3bblA 287 3.487 3c3kA 285 4.382 2iksA 293 4.661 2dri 271 5.786 2qu7A 288 5.795 2o20A 332 5.869 1m3sA 186 5.892 c.80.1.3 78573 3brqA 296 6.174 2fn9A 290 6.536 2z9wA 392 6.731 1gudA 288 7.668 c.93.1.1 83326 1vimA 200 8.279 c.80.1.3 100758 2oq2A 261 8.462 1rrmA 386 8.729 e.22.1.2 105081 1pjqA 457 8.770 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2gt1A 326 8.976 3bilA 348 9.028 2ioyA 283 9.407 1vljA 407 10.08 e.22.1.2 108832 2a3nA 355 10.13 1xngA 268 11.23 c.26.2.1 122186 1x9iA 302 11.61 c.80.1.1 114997 1j5xA 342 12.08 c.80.1.1 71591 1dbqA 289 12.16 c.93.1.1 35666 1qs0B 338 12.44 c.36.1.7,c.48.1.2 31830,33103 3brsA 289 12.47 1bykA 255 12.76 c.93.1.1 35706 1qmgA 524 12.95 a.100.1.2,c.2.1.6 18785,30182 2jbwA 386 13.03 2df8A 325 13.35 1sc6A 404 14.66 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1tlfA 301 15.07 c.93.1.1 35687 1wxiA 275 15.32 c.26.2.1 121400 1rzuA 485 15.33 c.87.1.8 105140 3ctpA 330 15.45 2fvyA 309 15.83 c.93.1.1 134227 2hufA 393 16.58 1m32A 366 17.45 c.67.1.3 78508 2cb0A 333 17.46 2h0aA 276 17.65 1f0kA 364 17.78 c.87.1.2 35465 1gca 309 17.86 2dr1A 386 17.98 1d2fA 390 18.50 c.67.1.3 34411 2amlA 373 18.76 2j6iA 364 19.22 2i2wA 212 19.73 2dejA 350 20.32 1jftA 340 20.52 a.35.1.5,c.93.1.1 66652,66653 2yvaA 196 20.82 2p1zA 180 21.61 2q28A 564 21.83 1k2yX 463 22.39 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2uzhA 165 23.01 1b8gA 429 23.08 c.67.1.4 34499 3beoA 375 24.35 1zunA 325 24.57 c.26.2.2 125676 1wqaA 455 24.96 1nriA 306 25.59 c.80.1.3 86123 1surA 215 26.26 c.26.2.2 31620 2rjoA 332 28.34 1m22A 503 29.21 c.117.1.1 78464 1vjoA 393 29.24 c.67.1.3 100827 1ynuA 473 29.59 c.67.1.4 123762 1gpjA 404 30.93 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1pswA 348 31.23 c.87.1.7 88287 1moq 368 31.81 1q0qA 406 34.17 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2qwwA 154 34.52 1p5dX 463 36.07 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1iugA 352 36.13 c.67.1.3 90699 8abp 306 36.23 1wuuA 399 36.75 d.14.1.5,d.58.26.7 114900,114901 2fssA 365 37.65 1bw0A 416 38.18 c.67.1.1 34385 1x92A 199 38.79 c.80.1.3 114976 1umdA 367 38.93 c.36.1.11 99599 3cogA 403 39.88 1jyeA 349 42.09 c.93.1.1 67455 2iw1A 374 43.12 c.87.1.8 137738 1ozhA 566 43.19 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2ahrA 259 43.23 a.100.1.10,c.2.1.6 126775,126776 2gs8A 317 43.51 1kmkA 406 43.85 c.67.1.3 68696 2jfuA 291 43.85 2d59A 144 44.54 c.2.1.8 131266 1iirA 415 45.93 c.87.1.5 62453 1moqA 368 46.52 c.80.1.1 35302 1t3gA 159 47.42 1qz9A 416 47.73 c.67.1.3 96621 1uk8A 282 48.06 c.69.1.10 107907 2g76A 335 48.11 1j0aA 325 48.44 c.79.1.1 83871 1u2eA 289 51.03 1xdwA 331 51.60 1u5kA 244 51.85 b.40.4.13,g.45.1.2 113038,113039 2yrrA 353 51.85 2v3gA 283 52.41 1gdeA 389 52.52 c.67.1.1 60456 8abpA 306 52.83 c.93.1.1 35647 3c6qA 311 52.87 1pieA 419 53.73 d.14.1.5,d.58.26.7 94706,94707 1yqgA 263 54.31 2uubB 256 54.51 c.23.15.1 139932 1ko7A 314 56.48 c.98.2.1,c.91.1.2 72797,72798 2dplA 308 56.71 1a04A 215 58.45 a.4.6.2,c.23.1.1 16234,31089 2o4cA 380 58.77 1wd7A 261 58.87 c.113.1.1 114526 1ujqA 305 59.36 c.1.12.7 99463 1qgoA 264 60.30 c.92.1.2 35596 1ve2A 235 61.15 c.90.1.1 120008 1c7nA 399 61.77 c.67.1.3 34413 1c4xA 285 64.49 c.69.1.10 34684 2ax4A 198 65.17 2pocA 367 65.29 1vdmA 153 65.51 c.61.1.1 119994 1w85A 368 65.52 c.36.1.11 114335 2f7lA 455 65.62 4crxA 322 65.80 a.60.9.1,d.163.1.1 18095,42155 1oi7A 288 65.87 c.2.1.8,c.23.4.1 87049,87050 1fukA 165 66.41 c.37.1.19 32409 1kgsA 225 68.27 a.4.6.1,c.23.1.1 68596,68597 2bwnA 401 68.86 c.67.1.4 129368 2gcgA 330 69.44 2p67A 341 70.42 2e5fA 325 70.78 1poxA 585 71.05 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1uu1A 335 71.20 c.67.1.1 99993 1kkhA 317 71.43 d.14.1.5,d.58.26.3 72645,72646 2e18A 257 71.45 2dwuA 276 71.64 1tibA 269 73.42 c.69.1.17 34738 1y37A 304 73.78 1aihA 170 74.36 d.163.1.1 42149 1vpvA 300 74.53 c.119.1.1 113975 2qiwA 255 76.35 1lc5A 364 76.54 c.67.1.1 73827 2g7uA 257 76.70 2ac2A 309 76.88 1tjyA 316 77.00 c.93.1.1 107062 1i36A 264 77.15 a.100.1.8,c.2.1.6 71108,71109 1gdhA 320 77.25 c.2.1.4,c.23.12.1 30095,31355 1arsA 396 77.38 c.67.1.1 34287 1o4sA 389 78.24 c.67.1.1 86620 1rxwA 336 78.79 a.60.7.1,c.120.1.2 98059,98060 1u08A 386 79.05 c.67.1.1 107543 1npyA 271 79.07 c.2.1.7,c.58.1.5 85995,85996 1byiA 224 79.80 c.37.1.10 32199 1eluA 390 80.70 c.67.1.3 34434 1zybA 232 81.76 a.4.5.4,b.82.3.2 125815,125816 2h3hA 313 82.17 1wy5A 317 82.43 c.26.2.5,d.229.1.1 121428,121429 2pjdA 343 83.38 1lsuA 147 84.43 c.2.1.9 74250 1td2A 287 85.17 c.72.1.5 106765 2qjwA 176 85.75