# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.15e-30 c.107.1.1 68027 1i74A 309 1.05e-28 c.107.1.1 61867 1ir6A 424 2.40e-28 c.107.1.2 71342 2eb0A 307 1.54e-26 2qb7A 397 3.10e-19 1wpnA 188 3.20e-18 c.107.1.1 114826 1rrmA 386 1.869 e.22.1.2 105081 1qs0B 338 1.881 c.36.1.7,c.48.1.2 31830,33103 3cs3A 277 2.037 2rgyA 290 2.564 1vjoA 393 3.252 c.67.1.3 100827 1vljA 407 3.616 e.22.1.2 108832 1ynuA 473 3.681 c.67.1.4 123762 1pjqA 457 3.893 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fepA 289 4.429 1surA 215 4.549 c.26.2.2 31620 1iugA 352 4.858 c.67.1.3 90699 2o20A 332 4.879 2dr1A 386 5.586 3bblA 287 6.654 2driA 271 6.707 c.93.1.1 35637 2gt1A 326 6.779 2gs8A 317 7.169 1a04A 215 8.331 a.4.6.2,c.23.1.1 16234,31089 2dri 271 8.355 1gudA 288 8.405 c.93.1.1 83326 1qmgA 524 10.00 a.100.1.2,c.2.1.6 18785,30182 2oq2A 261 10.07 1vimA 200 10.83 c.80.1.3 100758 1zunA 325 10.99 c.26.2.2 125676 2bwnA 401 11.08 c.67.1.4 129368 2z9wA 392 11.57 2j6iA 364 11.78 1f0kA 364 12.36 c.87.1.2 35465 1xngA 268 12.84 c.26.2.1 122186 1jeoA 180 13.13 c.80.1.3 66611 1q0qA 406 13.28 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2pocA 367 13.45 2qu7A 288 13.50 1m32A 366 13.51 c.67.1.3 78508 2hufA 393 14.20 1gdhA 320 14.26 c.2.1.4,c.23.12.1 30095,31355 1b8gA 429 14.37 c.67.1.4 34499 1bw0A 416 14.55 c.67.1.1 34385 1pswA 348 14.91 c.87.1.7 88287 1x9iA 302 15.81 c.80.1.1 114997 1m3sA 186 16.38 c.80.1.3 78573 2a3nA 355 16.61 1iirA 415 16.88 c.87.1.5 62453 1d2fA 390 17.13 c.67.1.3 34411 8abp 306 17.17 1gpjA 404 17.47 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2ax4A 198 17.99 2jfuA 291 18.35 2yrrA 353 18.83 1wy5A 317 19.10 c.26.2.5,d.229.1.1 121428,121429 1u6zA 513 19.32 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2fssA 365 19.94 2q28A 564 20.50 2r2nA 425 20.56 2iksA 293 20.82 1r7mA 235 21.49 d.95.2.1,d.95.2.1 111713,111714 2c31A 568 23.31 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 3cogA 403 23.36 1wd7A 261 23.40 c.113.1.1 114526 2oi2A 292 23.82 1moqA 368 24.05 c.80.1.1 35302 1m6sA 347 24.29 c.67.1.1 78701 3brsA 289 24.53 2a1fA 247 25.04 c.73.1.3 125991 1moq 368 25.87 3brqA 296 25.94 2zg5A 397 26.39 2fn9A 290 27.15 2dejA 350 27.79 1qz9A 416 28.67 c.67.1.3 96621 1d3gA 367 30.70 c.1.4.1 28600 1yadA 221 30.72 1mx3A 347 30.78 c.2.1.4,c.23.12.1 79638,79639 1gdeA 389 31.01 c.67.1.1 60456 2fvyA 309 31.59 c.93.1.1 134227 1pieA 419 32.59 d.14.1.5,d.58.26.7 94706,94707 2dwuA 276 32.73 1sc6A 404 32.83 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1tlfA 301 33.00 c.93.1.1 35687 1lsuA 147 33.42 c.2.1.9 74250 3beoA 375 33.52 1jg8A 347 34.47 c.67.1.1 62946 1dbqA 289 34.72 c.93.1.1 35666 1rzuA 485 34.89 c.87.1.8 105140 2ioyA 283 34.91 1p5dX 463 34.96 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1j5xA 342 35.39 c.80.1.1 71591 1gca 309 35.65 1eg5A 384 36.04 c.67.1.3 34429 3bilA 348 36.16 2qiwA 255 36.30 2p6pA 384 37.48 1u5kA 244 37.85 b.40.4.13,g.45.1.2 113038,113039 2e9xC 219 38.92 1k2yX 463 39.08 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2ejaA 338 39.80 1sur 215 40.26 3c6qA 311 41.27 2jbwA 386 41.64 1kgsA 225 41.67 a.4.6.1,c.23.1.1 68596,68597 1m22A 503 41.84 c.117.1.1 78464 1jr2A 286 42.14 c.113.1.1 67111 1s3jA 155 42.37 a.4.5.28 98437 1wqaA 455 44.97 1c7nA 399 45.13 c.67.1.3 34413 2r0bA 154 45.61 2bfdA 400 45.99 1bykA 255 46.17 c.93.1.1 35706 2ahrA 259 46.44 a.100.1.10,c.2.1.6 126775,126776 1ahxA 396 46.64 c.67.1.1 34293 1wyuA 438 46.93 c.67.1.7 121452 1wcwA 261 47.76 1wuuA 399 48.41 d.14.1.5,d.58.26.7 114900,114901 2qwwA 154 49.18 2d0iA 333 49.83 1wwkA 307 50.20 1vhwA 253 50.23 c.56.2.1 100706 1vpdA 299 50.44 a.100.1.1,c.2.1.6 113951,113952 1nytA 271 51.81 c.2.1.7,c.58.1.5 86417,86418 2e87A 357 52.28 1npyA 271 52.31 c.2.1.7,c.58.1.5 85995,85996 1y2mA 716 52.95 2nt2A 145 53.16 2gcgA 330 53.87 2fuvA 549 54.09 2akoA 251 54.11 c.73.1.3 126923 2amlA 373 55.26 2o4cA 380 55.80 1q74A 303 56.01 c.134.1.1 96019 8abpA 306 57.48 c.93.1.1 35647 1kmkA 406 57.89 c.67.1.3 68696 1p3wA 404 58.43 c.67.1.3 87752 1vi2A 300 58.78 c.2.1.7,c.58.1.5 100726,100727 3c3kA 285 59.01 1yzyA 413 59.21 c.146.1.1 124292 1iukA 140 59.36 c.2.1.8 83712 1wxiA 275 59.44 c.26.2.1 121400 2pq6A 482 59.53 2g1uA 155 60.18 1zclA 180 60.35 2gzmA 267 60.47 1j0aA 325 61.09 c.79.1.1 83871 2df8A 325 61.17 2ac7A 235 61.38 c.56.2.1 126543 3caiA 406 61.62 2iyaA 424 61.81 2iw1A 374 61.96 c.87.1.8 137738 2yvtA 260 63.06 1dxy 333 64.50 1fwkA 296 64.58 d.14.1.5,d.58.26.1 37576,39398 1byiA 224 64.72 c.37.1.10 32199 1id1A 153 64.86 c.2.1.9 62286 2o7cA 398 65.03 2pi1A 334 65.10 1tibA 269 65.74 c.69.1.17 34738 3tmkA 216 65.81 c.37.1.1 31920 2p54A 267 66.51 a.123.1.1 139497 3ctpA 330 66.71 3c4vA 426 67.44 1l2uA 245 67.63 c.1.2.3 73516 2cb0A 333 67.81 1ko7A 314 68.85 c.98.2.1,c.91.1.2 72797,72798 1tjyA 316 68.88 c.93.1.1 107062 2o1eA 312 69.15 1pmmA 466 69.31 c.67.1.6 94901 2e18A 257 69.49 2eq5A 228 69.84 2d59A 144 70.35 c.2.1.8 131266 1bjwA 382 70.69 c.67.1.1 34349 1q6zA 528 72.81 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1wstA 417 73.99 c.67.1.1 121244 1zybA 232 74.33 a.4.5.4,b.82.3.2 125815,125816 3ce9A 354 74.37 1fx7A 230 75.83 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1xdwA 331 76.19 1bj4A 470 76.33 c.67.1.4 34479 1h1yA 228 76.49 c.1.2.2 76506 2i2wA 212 76.93 2p1zA 180 77.50 1cs1A 386 77.72 c.67.1.3 34399 2c3zA 222 78.14 1usgA 346 78.32 c.93.1.1 99864 1ujqA 305 78.66 c.1.12.7 99463 1vp4A 425 79.56 c.67.1.1 113935 1w85A 368 80.57 c.36.1.11 114335 1ozhA 566 80.89 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1j24A 143 80.97 c.52.1.20 84008 1fukA 165 81.33 c.37.1.19 32409 2uzhA 165 81.85 1lc5A 364 82.82 c.67.1.1 73827 1u08A 386 83.64 c.67.1.1 107543 2pjdA 343 83.79 2o6yA 521 84.03 2dplA 308 84.04 2v3gA 283 84.27 1snyA 267 84.40 c.2.1.2 105833 1qgoA 264 84.42 c.92.1.2 35596 2jejA 358 85.39 d.240.1.1,e.8.1.7 138284,138285 1fnsA 196 86.32 c.62.1.1 34136 1j4aA 333 86.60 c.2.1.4,c.23.12.1 71502,71503 1p77A 272 87.76 c.2.1.7,c.58.1.5 94214,94215 1wyuB 474 89.29 c.67.1.7 121453