# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.23e-29 c.107.1.1 68027 1i74A 309 2.44e-27 c.107.1.1 61867 1ir6A 424 8.34e-27 c.107.1.2 71342 2eb0A 307 5.19e-26 2qb7A 397 7.70e-20 1wpnA 188 1.32e-17 c.107.1.1 114826 2rgyA 290 0.6555 1vljA 407 0.8056 e.22.1.2 108832 2fepA 289 1.587 1rrmA 386 1.982 e.22.1.2 105081 3bblA 287 2.083 3cs3A 277 2.334 2driA 271 2.387 c.93.1.1 35637 1pjqA 457 2.408 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2dri 271 2.942 3c3kA 285 3.778 1gudA 288 4.794 c.93.1.1 83326 2dr1A 386 5.016 2jfuA 291 5.061 2fn9A 290 5.195 1ynuA 473 6.487 c.67.1.4 123762 2iksA 293 7.098 2o20A 332 7.114 1jeoA 180 7.370 c.80.1.3 66611 3brqA 296 7.475 2fvyA 309 8.038 c.93.1.1 134227 2gt1A 326 8.366 2hufA 393 8.694 2z9wA 392 9.684 1x9iA 302 10.00 c.80.1.1 114997 1gca 309 10.26 3bilA 348 10.39 2ioyA 283 10.45 2jbwA 386 10.61 1qs0B 338 10.68 c.36.1.7,c.48.1.2 31830,33103 2h0aA 276 11.10 2dejA 350 11.28 2qu7A 288 11.61 1xngA 268 12.16 c.26.2.1 122186 1f0kA 364 12.51 c.87.1.2 35465 2oq2A 261 12.71 1p5dX 463 13.33 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1k2yX 463 13.56 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2gs8A 317 13.92 3brsA 289 15.57 8abp 306 16.04 1zunA 325 16.52 c.26.2.2 125676 1kkhA 317 17.00 d.14.1.5,d.58.26.3 72645,72646 1wuuA 399 17.08 d.14.1.5,d.58.26.7 114900,114901 1bykA 255 17.13 c.93.1.1 35706 1m32A 366 17.30 c.67.1.3 78508 1b8gA 429 17.60 c.67.1.4 34499 1tlfA 301 18.29 c.93.1.1 35687 1dbqA 289 18.79 c.93.1.1 35666 1iugA 352 18.85 c.67.1.3 90699 1vjoA 393 19.62 c.67.1.3 100827 1surA 215 19.77 c.26.2.2 31620 2j6iA 364 20.35 1pswA 348 20.67 c.87.1.7 88287 3ctpA 330 20.81 1pieA 419 21.42 d.14.1.5,d.58.26.7 94706,94707 2yrrA 353 22.47 1m22A 503 23.01 c.117.1.1 78464 1x92A 199 23.21 c.80.1.3 114976 1wqaA 455 23.63 2q28A 564 24.00 1jftA 340 25.61 a.35.1.5,c.93.1.1 66652,66653 1wd7A 261 25.99 c.113.1.1 114526 1gdhA 320 26.67 c.2.1.4,c.23.12.1 30095,31355 1gpjA 404 27.12 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1d2fA 390 28.34 c.67.1.3 34411 1m3sA 186 28.56 c.80.1.3 78573 2df8A 325 28.99 1vimA 200 29.38 c.80.1.3 100758 3beoA 375 29.43 1q06A 135 30.02 a.6.1.3 95493 2yvaA 196 30.09 2i2wA 212 31.23 1rzuA 485 31.46 c.87.1.8 105140 1wxiA 275 31.85 c.26.2.1 121400 2a3nA 355 32.79 2uzhA 165 34.77 2fuvA 549 35.27 1qmgA 524 35.59 a.100.1.2,c.2.1.6 18785,30182 2ay1A 394 35.97 c.67.1.1 34357 2ejaA 338 36.37 1q0qA 406 36.96 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2cb0A 333 38.05 1iirA 415 40.16 c.87.1.5 62453 1t3gA 159 40.57 1umdA 367 40.97 c.36.1.11 99599 1ko7A 314 41.36 c.98.2.1,c.91.1.2 72797,72798 2nlyA 245 42.24 c.6.2.7 138364 1c7nA 399 42.25 c.67.1.3 34413 2ax4A 198 42.64 2qwwA 154 42.70 2pocA 367 42.85 8abpA 306 44.02 c.93.1.1 35647 1poxA 585 45.09 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2e7jA 371 45.65 1wcwA 261 46.02 2oi2A 292 46.13 1gdeA 389 47.34 c.67.1.1 60456 2q0xA 335 48.19 1sc6A 404 48.37 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2amlA 373 48.43 2c0rA 362 48.49 c.67.1.4 129604 2bwnA 401 48.59 c.67.1.4 129368 2phnA 254 49.62 d.340.1.1 139696 1kmkA 406 50.22 c.67.1.3 68696 2gcgA 330 50.38 2d59A 144 50.64 c.2.1.8 131266 2v3gA 283 52.21 1ozhA 566 53.03 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1u5kA 244 53.08 b.40.4.13,g.45.1.2 113038,113039 1npyA 271 53.25 c.2.1.7,c.58.1.5 85995,85996 3caiA 406 53.34 2z1mA 345 53.68 1u6zA 513 55.39 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2rjoA 332 57.80 1jyeA 349 58.72 c.93.1.1 67455 2dwuA 276 58.82 1owlA 484 59.10 a.99.1.1,c.28.1.1 93647,93648 1i1wA 303 59.25 c.1.8.3 76732 1vfsA 386 59.52 b.49.2.2,c.1.6.1 108584,108585 1j5xA 342 59.64 c.80.1.1 71591 1bw0A 416 59.65 c.67.1.1 34385 2brxA 244 60.22 c.73.1.3 129028 2p1zA 180 61.30 1eluA 390 61.53 c.67.1.3 34434 1aihA 170 61.84 d.163.1.1 42149 1yqgA 263 63.93 2qs9A 194 64.58 1w85A 368 64.97 c.36.1.11 114335 1d3gA 367 65.93 c.1.4.1 28600 2csuA 457 66.32 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1khtA 192 67.20 c.37.1.1 84401 2pg9A 337 67.33 2p54A 267 69.33 a.123.1.1 139497 3c6qA 311 69.46 1ahxA 396 71.11 c.67.1.1 34293 4crxA 322 71.26 a.60.9.1,d.163.1.1 18095,42155 1e5dA 402 72.29 c.23.5.1,d.157.1.3 31208,42061 1sur 215 74.72 2v8pA 271 75.86 2r2nA 425 76.05 2ac2A 309 76.54 1o4sA 389 76.57 c.67.1.1 86620 1eg5A 384 76.60 c.67.1.3 34429 2g9iA 249 77.33 d.340.1.1 134806 1tjyA 316 77.77 c.93.1.1 107062 1y37A 304 78.13 1kgsA 225 78.27 a.4.6.1,c.23.1.1 68596,68597 1uu1A 335 79.04 c.67.1.1 99993 2dx0A 138 79.51 1qdeA 224 79.78 c.37.1.19 32410 1lu4A 136 80.79 c.47.1.10 91124 1byiA 224 81.24 c.37.1.10 32199 2fssA 365 81.45 3tmkA 216 81.93 c.37.1.1 31920 2infA 359 84.13 2cwcA 303 84.25 1xizA 159 84.68 d.112.1.1 115375 1j0aA 325 85.34 c.79.1.1 83871 2a2cA 478 86.11 1t8tA 271 86.63 c.37.1.5 106685 1u02A 239 87.00 c.108.1.15 107538 3d02A 303 87.33 1s3jA 155 87.47 a.4.5.28 98437 1r9lA 309 88.06 c.94.1.1 97262 2d2eA 250 88.14 1a04A 215 88.18 a.4.6.2,c.23.1.1 16234,31089 1lc5A 364 88.39 c.67.1.1 73827 1wy5A 317 89.69 c.26.2.5,d.229.1.1 121428,121429