# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.63e-28 c.107.1.1 68027 1i74A 309 1.07e-26 c.107.1.1 61867 1ir6A 424 2.60e-26 c.107.1.2 71342 2eb0A 307 2.32e-25 2qb7A 397 1.85e-19 1wpnA 188 3.55e-17 c.107.1.1 114826 2rgyA 290 1.061 1vljA 407 1.563 e.22.1.2 108832 1rrmA 386 1.771 e.22.1.2 105081 1pjqA 457 2.221 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fepA 289 2.304 3cs3A 277 2.337 2driA 271 3.120 c.93.1.1 35637 3bblA 287 3.509 2dri 271 3.855 1ynuA 473 4.142 c.67.1.4 123762 3c3kA 285 4.888 2jfuA 291 4.917 2z9wA 392 4.985 2dr1A 386 5.964 1jeoA 180 6.236 c.80.1.3 66611 1gudA 288 6.709 c.93.1.1 83326 1x9iA 302 6.819 c.80.1.1 114997 1m32A 366 7.414 c.67.1.3 78508 2hufA 393 7.785 2gt1A 326 8.245 1qs0B 338 9.152 c.36.1.7,c.48.1.2 31830,33103 3brqA 296 9.304 1iugA 352 9.382 c.67.1.3 90699 2fn9A 290 9.634 2dejA 350 9.857 2iksA 293 10.20 2o20A 332 10.37 2gs8A 317 10.40 2fvyA 309 10.81 c.93.1.1 134227 1wuuA 399 11.77 d.14.1.5,d.58.26.7 114900,114901 1f0kA 364 11.98 c.87.1.2 35465 2q28A 564 12.17 2h0aA 276 12.42 1gca 309 12.50 1b8gA 429 12.75 c.67.1.4 34499 2qu7A 288 12.90 2jbwA 386 13.47 2ioyA 283 13.60 2j6iA 364 13.73 1rzuA 485 14.29 c.87.1.8 105140 1d2fA 390 14.44 c.67.1.3 34411 3ctpA 330 14.71 1vjoA 393 14.90 c.67.1.3 100827 3bilA 348 15.46 1p5dX 463 15.99 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1bykA 255 17.99 c.93.1.1 35706 2yrrA 353 18.32 1xngA 268 18.49 c.26.2.1 122186 1tlfA 301 19.08 c.93.1.1 35687 1kkhA 317 19.17 d.14.1.5,d.58.26.3 72645,72646 1k2yX 463 19.22 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 3brsA 289 19.29 1umdA 367 19.84 c.36.1.11 99599 1m22A 503 19.89 c.117.1.1 78464 1gdhA 320 20.06 c.2.1.4,c.23.12.1 30095,31355 1zunA 325 20.88 c.26.2.2 125676 1dbqA 289 20.89 c.93.1.1 35666 2oq2A 261 20.90 1q0qA 406 20.97 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1gpjA 404 23.04 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1pieA 419 23.08 d.14.1.5,d.58.26.7 94706,94707 1m3sA 186 23.37 c.80.1.3 78573 1vimA 200 23.85 c.80.1.3 100758 1poxA 585 24.65 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1pswA 348 24.93 c.87.1.7 88287 2ejaA 338 25.47 2cb0A 333 25.49 1wqaA 455 25.58 1wxiA 275 26.25 c.26.2.1 121400 2oi2A 292 26.36 2ay1A 394 26.52 c.67.1.1 34357 1qmgA 524 26.83 a.100.1.2,c.2.1.6 18785,30182 2df8A 325 26.87 1jftA 340 27.90 a.35.1.5,c.93.1.1 66652,66653 8abp 306 28.25 3beoA 375 29.73 1c7nA 399 30.87 c.67.1.3 34413 1wd7A 261 32.07 c.113.1.1 114526 2yvaA 196 32.92 3caiA 406 33.41 2r2nA 425 34.07 2amlA 373 34.69 2pocA 367 34.86 1q06A 135 35.14 a.6.1.3 95493 1bw0A 416 35.57 c.67.1.1 34385 1surA 215 35.69 c.26.2.2 31620 2uzhA 165 35.85 2e7jA 371 36.27 2c0rA 362 37.43 c.67.1.4 129604 1u02A 239 38.41 c.108.1.15 107538 1ozhA 566 38.64 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1gdeA 389 40.48 c.67.1.1 60456 1t3gA 159 40.75 2fuvA 549 40.84 2nlyA 245 41.04 c.6.2.7 138364 2a3nA 355 41.51 1kmkA 406 41.62 c.67.1.3 68696 2i2wA 212 42.10 1x92A 199 42.11 c.80.1.3 114976 1w85A 368 42.30 c.36.1.11 114335 2p1zA 180 42.39 2fssA 365 43.60 2d59A 144 44.43 c.2.1.8 131266 1eg5A 384 45.25 c.67.1.3 34429 2bwnA 401 46.83 c.67.1.4 129368 2q0xA 335 46.99 2fyfA 398 48.28 2qwwA 154 50.91 2brxA 244 51.09 c.73.1.3 129028 2p54A 267 51.91 a.123.1.1 139497 2csuA 457 55.64 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vp4A 425 56.02 c.67.1.1 113935 1iirA 415 56.03 c.87.1.5 62453 2hfsA 332 56.36 1npyA 271 56.72 c.2.1.7,c.58.1.5 85995,85996 1jyeA 349 57.82 c.93.1.1 67455 3cogA 403 58.02 2qryA 330 58.62 2qs9A 194 59.20 2bkwA 385 59.63 c.67.1.3 128714 1sc6A 404 59.95 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1yqgA 263 60.12 2pg9A 337 60.22 1ahxA 396 60.35 c.67.1.1 34293 2v8pA 271 60.50 2djiA 590 61.98 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2c31A 568 62.56 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1wy5A 317 63.09 c.26.2.5,d.229.1.1 121428,121429 1ko7A 314 63.10 c.98.2.1,c.91.1.2 72797,72798 2z1mA 345 63.23 1y37A 304 63.91 1o4sA 389 63.91 c.67.1.1 86620 1arsA 396 64.78 c.67.1.1 34287 2gcgA 330 66.44 2infA 359 67.03 3tmkA 216 67.89 c.37.1.1 31920 1eluA 390 68.04 c.67.1.3 34434 1wcwA 261 68.68 2iyaA 424 69.23 2dwuA 276 69.53 1qdeA 224 70.21 c.37.1.19 32410 2rjoA 332 71.67 2pgnA 589 71.76 2iuyA 342 71.80 2a1fA 247 73.55 c.73.1.3 125991 1aihA 170 73.58 d.163.1.1 42149 1iukA 140 74.70 c.2.1.8 83712 2q7wA 396 76.29 2qmqA 286 78.30 1j5xA 342 79.09 c.80.1.1 71591 2va8A 715 79.22 2a2cA 478 79.54 1r9lA 309 79.79 c.94.1.1 97262 8abpA 306 80.89 c.93.1.1 35647 1j0aA 325 82.06 c.79.1.1 83871 1ve2A 235 82.78 c.90.1.1 120008 2v3gA 283 82.88 1byiA 224 84.05 c.37.1.10 32199 2p67A 341 85.68 1u5kA 244 86.07 b.40.4.13,g.45.1.2 113038,113039 1dxy 333 86.46 1m6sA 347 86.86 c.67.1.1 78701 1owlA 484 87.38 a.99.1.1,c.28.1.1 93647,93648 2jfnA 285 89.01 1uu1A 335 89.22 c.67.1.1 99993