# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.63e-28 c.107.1.1 68027 1i74A 309 6.65e-27 c.107.1.1 61867 1ir6A 424 2.62e-26 c.107.1.2 71342 2eb0A 307 1.92e-25 2qb7A 397 1.31e-19 1wpnA 188 3.29e-17 c.107.1.1 114826 2rgyA 290 1.008 1vljA 407 1.461 e.22.1.2 108832 1rrmA 386 1.922 e.22.1.2 105081 1pjqA 457 2.153 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fepA 289 2.265 3cs3A 277 2.270 2driA 271 2.278 c.93.1.1 35637 2dri 271 3.208 3bblA 287 3.478 1ynuA 473 4.304 c.67.1.4 123762 2fn9A 290 4.319 3c3kA 285 4.420 1qs0B 338 5.562 c.36.1.7,c.48.1.2 31830,33103 1gudA 288 6.355 c.93.1.1 83326 2o20A 332 6.855 3brqA 296 7.272 2dr1A 386 7.531 2dejA 350 7.773 2z9wA 392 8.131 2jfuA 291 8.270 2fvyA 309 8.293 c.93.1.1 134227 1jeoA 180 8.357 c.80.1.3 66611 2gt1A 326 8.537 2qu7A 288 9.067 1m32A 366 9.144 c.67.1.3 78508 3bilA 348 9.229 2gs8A 317 9.619 2jbwA 386 9.733 2iksA 293 10.21 1wuuA 399 10.46 d.14.1.5,d.58.26.7 114900,114901 2q28A 564 10.85 1x9iA 302 11.17 c.80.1.1 114997 1f0kA 364 11.29 c.87.1.2 35465 2h0aA 276 12.24 1b8gA 429 12.81 c.67.1.4 34499 1iugA 352 12.86 c.67.1.3 90699 2hufA 393 13.14 1p5dX 463 16.08 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vjoA 393 16.27 c.67.1.3 100827 3brsA 289 16.35 1gca 309 16.39 1tlfA 301 16.80 c.93.1.1 35687 3ctpA 330 17.32 1kkhA 317 17.44 d.14.1.5,d.58.26.3 72645,72646 2ioyA 283 17.45 1d2fA 390 17.67 c.67.1.3 34411 1bykA 255 18.22 c.93.1.1 35706 8abp 306 18.57 1dbqA 289 18.96 c.93.1.1 35666 1zunA 325 19.05 c.26.2.2 125676 1k2yX 463 19.20 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2oq2A 261 19.49 1q0qA 406 19.54 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2j6iA 364 20.47 1pieA 419 20.50 d.14.1.5,d.58.26.7 94706,94707 1gdhA 320 20.69 c.2.1.4,c.23.12.1 30095,31355 1gpjA 404 20.73 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xngA 268 20.92 c.26.2.1 122186 3beoA 375 20.96 2ay1A 394 22.48 c.67.1.1 34357 2yrrA 353 23.06 2ejaA 338 23.81 1poxA 585 24.61 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1pswA 348 25.78 c.87.1.7 88287 1ozhA 566 26.25 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1vimA 200 26.74 c.80.1.3 100758 2oi2A 292 26.86 1wqaA 455 28.54 1wd7A 261 29.37 c.113.1.1 114526 1jftA 340 29.71 a.35.1.5,c.93.1.1 66652,66653 1t3gA 159 30.81 1qmgA 524 31.26 a.100.1.2,c.2.1.6 18785,30182 1m3sA 186 32.25 c.80.1.3 78573 1c7nA 399 32.50 c.67.1.3 34413 2yvaA 196 32.83 1umdA 367 32.86 c.36.1.11 99599 1bw0A 416 33.06 c.67.1.1 34385 1iirA 415 33.07 c.87.1.5 62453 1wxiA 275 33.07 c.26.2.1 121400 1u02A 239 34.53 c.108.1.15 107538 1rzuA 485 35.06 c.87.1.8 105140 2amlA 373 37.38 2i2wA 212 37.54 2df8A 325 37.74 2pocA 367 37.84 2q0xA 335 38.47 1m22A 503 38.76 c.117.1.1 78464 3caiA 406 40.07 2cb0A 333 41.35 2a3nA 355 41.63 2bwnA 401 42.22 c.67.1.4 129368 1e5dA 402 42.84 c.23.5.1,d.157.1.3 31208,42061 2uzhA 165 42.94 1x92A 199 43.57 c.80.1.3 114976 2brxA 244 44.08 c.73.1.3 129028 1jyeA 349 44.39 c.93.1.1 67455 2c31A 568 44.56 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2csuA 457 45.61 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2d59A 144 46.04 c.2.1.8 131266 1yqgA 263 47.55 2pgnA 589 47.66 1q06A 135 48.52 a.6.1.3 95493 1o4sA 389 48.63 c.67.1.1 86620 2fssA 365 50.17 2c0rA 362 50.68 c.67.1.4 129604 1surA 215 50.70 c.26.2.2 31620 2r2nA 425 51.39 2rjoA 332 51.58 1eluA 390 51.70 c.67.1.3 34434 1y37A 304 51.70 2qs9A 194 52.30 8abpA 306 52.31 c.93.1.1 35647 1ko7A 314 52.71 c.98.2.1,c.91.1.2 72797,72798 2fuvA 549 53.21 1ahxA 396 53.66 c.67.1.1 34293 2nlyA 245 53.99 c.6.2.7 138364 1gdeA 389 54.63 c.67.1.1 60456 1npyA 271 55.08 c.2.1.7,c.58.1.5 85995,85996 2p1zA 180 57.19 3c6qA 311 57.23 2v3gA 283 57.34 3tmkA 216 57.50 c.37.1.1 31920 1t8tA 271 59.01 c.37.1.5 106685 1uu1A 335 59.14 c.67.1.1 99993 2qwwA 154 59.87 2iyaA 424 60.25 2e7jA 371 60.58 1khtA 192 61.95 c.37.1.1 84401 1w85A 368 62.42 c.36.1.11 114335 1j5xA 342 63.50 c.80.1.1 71591 2gcgA 330 64.12 1wcwA 261 65.57 1aihA 170 65.81 d.163.1.1 42149 1kmkA 406 66.18 c.67.1.3 68696 1elqA 390 66.65 c.67.1.3 34436 2infA 359 67.20 2pg9A 337 67.71 1owlA 484 69.05 a.99.1.1,c.28.1.1 93647,93648 2qryA 330 69.09 2p54A 267 69.31 a.123.1.1 139497 1i1wA 303 70.99 c.1.8.3 76732 2bkwA 385 71.70 c.67.1.3 128714 1eg5A 384 71.76 c.67.1.3 34429 1ve2A 235 73.57 c.90.1.1 120008 2a1fA 247 73.61 c.73.1.3 125991 1qtrA 317 74.56 c.69.1.7 34660 2phnA 254 74.61 d.340.1.1 139696 2dwuA 276 75.22 1qdeA 224 75.82 c.37.1.19 32410 1arsA 396 76.28 c.67.1.1 34287 2o7cA 398 77.26 2a2cA 478 77.55 2v8pA 271 77.66 1lc5A 364 78.42 c.67.1.1 73827 1sc6A 404 78.70 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1u5kA 244 79.12 b.40.4.13,g.45.1.2 113038,113039 2z1mA 345 80.65 2ax4A 198 81.19 1wy5A 317 81.32 c.26.2.5,d.229.1.1 121428,121429 3cogA 403 81.53 1byiA 224 81.81 c.37.1.10 32199 1m6sA 347 81.97 c.67.1.1 78701 1kgsA 225 82.15 a.4.6.1,c.23.1.1 68596,68597 2djiA 590 82.97 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2hfsA 332 83.48 1r9lA 309 83.87 c.94.1.1 97262 1uk8A 282 85.57 c.69.1.10 107907 2qjcA 262 86.37 2qmqA 286 86.50 1vfsA 386 86.69 b.49.2.2,c.1.6.1 108584,108585 2fyfA 398 88.54