# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 8.62e-31 c.107.1.1 68027 1ir6A 424 1.15e-29 c.107.1.2 71342 1i74A 309 1.21e-29 c.107.1.1 61867 2eb0A 307 7.51e-27 2qb7A 397 2.21e-21 1wpnA 188 2.16e-19 c.107.1.1 114826 1vljA 407 1.158 e.22.1.2 108832 1xngA 268 1.580 c.26.2.1 122186 1rrmA 386 1.702 e.22.1.2 105081 1rzuA 485 2.023 c.87.1.8 105140 2oq2A 261 2.226 2rgyA 290 4.875 2fepA 289 5.038 2hufA 393 5.082 1dvjA 246 5.272 c.1.2.3 28546 1qtwA 285 5.883 c.1.15.1 29392 2ay1A 394 7.066 c.67.1.1 34357 2driA 271 7.269 c.93.1.1 35637 1d2fA 390 7.585 c.67.1.3 34411 1qs0B 338 7.839 c.36.1.7,c.48.1.2 31830,33103 2iw1A 374 8.285 c.87.1.8 137738 2gs8A 317 8.291 2p6pA 384 8.721 2gt1A 326 8.959 8abp 306 9.877 2fn9A 290 10.16 2qu7A 288 10.39 1r7mA 235 11.02 d.95.2.1,d.95.2.1 111713,111714 2amlA 373 11.03 1f0kA 364 11.08 c.87.1.2 35465 1jeoA 180 11.12 c.80.1.3 66611 2z06A 252 11.36 3beoA 375 11.48 3cs3A 277 11.79 1gdeA 389 11.99 c.67.1.1 60456 1wuuA 399 13.26 d.14.1.5,d.58.26.7 114900,114901 1c4oA 664 13.56 c.37.1.19,c.37.1.19 32415,32416 1tlfA 301 14.46 c.93.1.1 35687 2o20A 332 14.51 1wyuA 438 15.80 c.67.1.7 121452 1yzyA 413 17.11 c.146.1.1 124292 2c0rA 362 17.71 c.67.1.4 129604 1u5kA 244 18.45 b.40.4.13,g.45.1.2 113038,113039 3c4vA 426 19.34 1kqpA 271 19.77 c.26.2.1 72883 2zg5A 397 20.94 8abpA 306 21.06 c.93.1.1 35647 1bykA 255 21.73 c.93.1.1 35706 2dri 271 22.43 1sg6A 393 22.76 e.22.1.1 105522 1okrA 123 24.75 a.4.5.39 93269 2oi2A 292 24.85 2iksA 293 26.30 1t3gA 159 27.18 2dtvA 397 27.73 2e18A 257 27.90 2q28A 564 27.94 1x9iA 302 28.10 c.80.1.1 114997 2vd8A 391 28.37 2j7tA 302 28.88 2ax4A 198 30.08 3brsA 289 30.13 1pq4A 291 30.14 c.92.2.2 94995 2hfsA 332 30.18 1uu1A 335 30.28 c.67.1.1 99993 1d2mA 665 30.81 c.37.1.19,c.37.1.19 32417,32418 2fvyA 309 31.18 c.93.1.1 134227 1ynuA 473 31.38 c.67.1.4 123762 1kvkA 395 33.12 d.14.1.5,d.58.26.3 73060,73061 3ctpA 330 33.60 2gekA 406 33.92 2dr1A 386 35.63 1vp4A 425 38.72 c.67.1.1 113935 2c8mA 262 39.41 1vpvA 300 39.50 c.119.1.1 113975 1e5dA 402 39.77 c.23.5.1,d.157.1.3 31208,42061 1j5xA 342 39.87 c.80.1.1 71591 1eg5A 384 40.16 c.67.1.3 34429 1vimA 200 40.18 c.80.1.3 100758 2a1fA 247 40.81 c.73.1.3 125991 1surA 215 40.84 c.26.2.2 31620 1tibA 269 41.22 c.69.1.17 34738 2prsA 284 41.92 1gdhA 320 42.10 c.2.1.4,c.23.12.1 30095,31355 1b8gA 429 42.26 c.67.1.4 34499 1sd4A 126 43.00 a.4.5.39 105428 1wd7A 261 43.81 c.113.1.1 114526 1vjoA 393 44.21 c.67.1.3 100827 2va8A 715 45.01 1km4A 247 45.63 c.1.2.3 72740 1dbqA 289 45.63 c.93.1.1 35666 1pieA 419 45.67 d.14.1.5,d.58.26.7 94706,94707 1kgsA 225 46.08 a.4.6.1,c.23.1.1 68596,68597 2dt9A 167 46.49 1pda 315 46.70 1id1A 153 47.42 c.2.1.9 62286 2yvtA 260 47.44 3bf7A 255 48.92 1jmkC 230 49.18 c.69.1.22 71747 2fuvA 549 49.20 3tmkA 216 49.71 c.37.1.1 31920 1moq 368 49.82 1mtzA 293 49.99 c.69.1.7 79467 3bilA 348 50.62 2yrrA 353 51.48 1gt6A 269 51.93 c.69.1.17 76342 2jbwA 386 53.98 2dejA 350 54.56 1aquA 297 56.89 c.37.1.5 31942 1c7nA 399 57.11 c.67.1.3 34413 1qmgA 524 58.42 a.100.1.2,c.2.1.6 18785,30182 2cb0A 333 58.80 2o4cA 380 58.91 3c0wA 235 59.48 1l3iA 192 59.73 c.66.1.22 77676 2yvaA 196 60.29 1yacA 208 61.35 c.33.1.3 31757 2e85A 159 61.57 1ahxA 396 61.82 c.67.1.1 34293 2ahrA 259 61.90 a.100.1.10,c.2.1.6 126775,126776 1wy5A 317 61.92 c.26.2.5,d.229.1.1 121428,121429 2px6A 316 62.23 2dplA 308 62.66 1ko3A 230 63.46 d.157.1.1 90974 2pocA 367 63.84 1gudA 288 65.27 c.93.1.1 83326 2b34A 199 66.13 1gca 309 67.05 1wxiA 275 67.09 c.26.2.1 121400 1mgpA 313 67.59 c.119.1.1 79098 2iyaA 424 68.33 1iirA 415 68.51 c.87.1.5 62453 1z82A 335 69.20 1k8qA 377 70.22 c.69.1.6 72177 1r8eA 278 70.89 a.6.1.3,d.60.1.1 104843,104844 1kq3A 376 71.55 e.22.1.2 68790 1wcwA 261 72.29 1xp3A 307 72.91 c.1.15.1 122210 1kkhA 317 74.17 d.14.1.5,d.58.26.3 72645,72646 3bwxA 285 76.33 3c3kA 285 77.13 1v2dA 381 77.46 c.67.1.1 108281 1dxy 333 78.86 1umdB 324 79.97 c.36.1.7,c.48.1.2 99600,99601 1whsA 255 81.71 c.69.1.5 34649 1di1A 300 81.90 a.128.1.4 19446 2g7zA 282 83.22 2g9iA 249 84.33 d.340.1.1 134806 2r2nA 425 85.37 2e5aA 347 86.73 1mw9X 592 87.04 e.10.1.1 91480 3c85A 183 87.16 1umdA 367 87.68 c.36.1.11 99599 2iuyA 342 89.10