# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 9.99e-32 c.107.1.1 68027 1i74A 309 5.30e-30 c.107.1.1 61867 1ir6A 424 2.93e-29 c.107.1.2 71342 2eb0A 307 2.67e-28 2qb7A 397 2.90e-21 1wpnA 188 2.68e-18 c.107.1.1 114826 2fepA 289 1.136 1vljA 407 1.224 e.22.1.2 108832 1pjqA 457 2.201 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ynuA 473 2.872 c.67.1.4 123762 3bblA 287 3.336 3cs3A 277 3.651 2rgyA 290 3.737 2z9wA 392 3.959 1jeoA 180 4.807 c.80.1.3 66611 1qs0B 338 4.839 c.36.1.7,c.48.1.2 31830,33103 1gudA 288 4.871 c.93.1.1 83326 1f0kA 364 5.685 c.87.1.2 35465 1rrmA 386 5.770 e.22.1.2 105081 2hufA 393 5.816 2dr1A 386 6.225 2driA 271 6.609 c.93.1.1 35637 1wuuA 399 7.336 d.14.1.5,d.58.26.7 114900,114901 2dri 271 7.749 1m32A 366 8.434 c.67.1.3 78508 3brsA 289 8.664 1rzuA 485 8.759 c.87.1.8 105140 2jbwA 386 9.583 2qu7A 288 10.00 1iugA 352 10.46 c.67.1.3 90699 2gt1A 326 10.56 2gs8A 317 12.01 1b8gA 429 13.64 c.67.1.4 34499 3c3kA 285 14.48 1gdhA 320 14.67 c.2.1.4,c.23.12.1 30095,31355 2oq2A 261 14.73 1m22A 503 16.58 c.117.1.1 78464 2fvyA 309 16.63 c.93.1.1 134227 2a3nA 355 17.30 2j6iA 364 17.35 1d3gA 367 18.52 c.1.4.1 28600 2iw1A 374 18.98 c.87.1.8 137738 1a04A 215 19.24 a.4.6.2,c.23.1.1 16234,31089 1m3sA 186 19.33 c.80.1.3 78573 1qmgA 524 20.21 a.100.1.2,c.2.1.6 18785,30182 3beoA 375 20.24 1vimA 200 20.33 c.80.1.3 100758 1q0qA 406 20.36 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1j5xA 342 20.43 c.80.1.1 71591 1t3gA 159 20.63 1kkhA 317 20.69 d.14.1.5,d.58.26.3 72645,72646 1sc6A 404 21.09 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o20A 332 21.29 1tlfA 301 21.47 c.93.1.1 35687 1byiA 224 21.48 c.37.1.10 32199 2dejA 350 21.86 1gpjA 404 22.42 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1pieA 419 22.57 d.14.1.5,d.58.26.7 94706,94707 1lc5A 364 23.36 c.67.1.1 73827 1d2fA 390 23.80 c.67.1.3 34411 1dbqA 289 23.93 c.93.1.1 35666 2v3gA 283 25.07 1x9iA 302 25.32 c.80.1.1 114997 3bilA 348 26.07 1vjoA 393 27.60 c.67.1.3 100827 2p1zA 180 27.89 1xngA 268 28.05 c.26.2.1 122186 8abp 306 28.41 1gca 309 28.92 2q28A 564 29.29 2ay1A 394 29.48 c.67.1.1 34357 2oi2A 292 30.60 2akoA 251 30.83 c.73.1.3 126923 2fuvA 549 31.00 2df8A 325 31.25 1bw0A 416 31.55 c.67.1.1 34385 2zg5A 397 34.06 2yrrA 353 35.40 2infA 359 35.50 1ozhA 566 36.05 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1bjwA 382 36.24 c.67.1.1 34349 2p10A 286 36.77 1fwkA 296 37.04 d.14.1.5,d.58.26.1 37576,39398 2a1fA 247 37.72 c.73.1.3 125991 1dxy 333 38.12 2dwuA 276 38.48 2r2nA 425 38.97 2jfuA 291 39.39 1o4sA 389 39.49 c.67.1.1 86620 1p5dX 463 39.67 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fssA 365 39.79 1wxiA 275 41.01 c.26.2.1 121400 1k2yX 463 41.47 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1gdeA 389 41.88 c.67.1.1 60456 2iksA 293 42.16 1eg5A 384 42.25 c.67.1.3 34429 1m6sA 347 43.34 c.67.1.1 78701 3ctpA 330 43.39 1jg8A 347 43.42 c.67.1.1 62946 2gcgA 330 43.52 2i2wA 212 43.89 1dvjA 246 43.97 c.1.2.3 28546 1pswA 348 44.65 c.87.1.7 88287 1khtA 192 44.89 c.37.1.1 84401 2bwnA 401 47.17 c.67.1.4 129368 1vp4A 425 47.84 c.67.1.1 113935 2d59A 144 49.31 c.2.1.8 131266 2ejaA 338 49.59 1wqaA 455 49.65 2h0aA 276 49.94 1e5dA 402 50.15 c.23.5.1,d.157.1.3 31208,42061 1y2mA 716 51.51 1c7nA 399 51.73 c.67.1.3 34413 1bykA 255 51.90 c.93.1.1 35706 2ahrA 259 51.94 a.100.1.10,c.2.1.6 126775,126776 1u6zA 513 52.25 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ko7A 314 53.53 c.98.2.1,c.91.1.2 72797,72798 1wd7A 261 54.31 c.113.1.1 114526 2qs7A 144 54.76 2ioyA 283 55.64 3brqA 296 55.86 2jejA 358 55.95 d.240.1.1,e.8.1.7 138284,138285 3cogA 403 58.11 2a2cA 478 58.13 1eluA 390 59.03 c.67.1.3 34434 2fn9A 290 59.05 2qwwA 154 59.10 2hfsA 332 59.71 2nlyA 245 60.25 c.6.2.7 138364 1jftA 340 61.97 a.35.1.5,c.93.1.1 66652,66653 1zunA 325 62.48 c.26.2.2 125676 1poxA 585 62.52 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1np3A 338 62.94 a.100.1.2,c.2.1.6 85946,85947 2ax4A 198 63.51 2z1yA 397 63.65 2eq5A 228 63.66 1qz9A 416 64.49 c.67.1.3 96621 1yqgA 263 64.88 1j0aA 325 65.87 c.79.1.1 83871 1uu1A 335 66.18 c.67.1.1 99993 2uzhA 165 68.11 1kmkA 406 68.21 c.67.1.3 68696 2rjoA 332 68.45 2fhxA 246 69.29 1mgpA 313 69.54 c.119.1.1 79098 2brxA 244 70.56 c.73.1.3 129028 1iukA 140 70.67 c.2.1.8 83712 3tmkA 216 72.33 c.37.1.1 31920 1b5tA 275 73.34 c.1.23.1 29676 2i7vA 459 74.46 2qjcA 262 74.65 1r7mA 235 74.99 d.95.2.1,d.95.2.1 111713,111714 2e9xC 219 75.02 2p54A 267 75.29 a.123.1.1 139497 1wcwA 261 75.47 2amlA 373 75.74 1x92A 199 76.79 c.80.1.3 114976 1u5kA 244 77.05 b.40.4.13,g.45.1.2 113038,113039 1arsA 396 77.81 c.67.1.1 34287 1oi7A 288 77.96 c.2.1.8,c.23.4.1 87049,87050 1vpdA 299 78.46 a.100.1.1,c.2.1.6 113951,113952 1wstA 417 78.81 c.67.1.1 121244 2qs9A 194 78.91 2c31A 568 79.42 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2gekA 406 79.80 1ujqA 305 79.84 c.1.12.7 99463 2q7wA 396 80.11 2o1eA 312 80.22 1h72C 296 81.16 d.14.1.5,d.58.26.1 60712,60713 1u08A 386 81.49 c.67.1.1 107543 1lu4A 136 81.60 c.47.1.10 91124 2cb0A 333 82.41 1mx3A 347 82.67 c.2.1.4,c.23.12.1 79638,79639 1jvsA 400 83.24 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1i36A 264 83.41 a.100.1.8,c.2.1.6 71108,71109 2dplA 308 83.88 1js3A 486 84.00 c.67.1.6 67215 1q06A 135 85.66 a.6.1.3 95493 1ahxA 396 85.76 c.67.1.1 34293 1p3wA 404 85.92 c.67.1.3 87752 1surA 215 86.34 c.26.2.2 31620 1iowA 306 87.47 c.30.1.2,d.142.1.1 31713,41481 1vpvA 300 87.52 c.119.1.1 113975 2oq1A 254 88.34 d.93.1.1,d.93.1.1 139220,139221 1xizA 159 88.42 d.112.1.1 115375 1uc7A 125 88.88 c.47.1.1 99163 1nslA 184 89.17 d.108.1.1 86137