# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.13e-21 c.107.1.1 68027 1i74A 309 2.60e-20 c.107.1.1 61867 1ir6A 424 2.70e-20 c.107.1.2 71342 2eb0A 307 4.31e-19 2qb7A 397 1.18e-14 1wpnA 188 1.01e-11 c.107.1.1 114826 2ihtA 573 0.9045 2j6iA 364 3.901 2q28A 564 4.409 3bgaA 1010 5.656 1vljA 407 6.194 e.22.1.2 108832 1bw0A 416 6.250 c.67.1.1 34385 2fssA 365 7.384 2vccA 891 7.736 1ile 821 7.746 1qs0B 338 7.768 c.36.1.7,c.48.1.2 31830,33103 2pgnA 589 8.371 2fepA 289 8.572 1wuuA 399 10.90 d.14.1.5,d.58.26.7 114900,114901 1rrmA 386 11.31 e.22.1.2 105081 2jejA 358 12.40 d.240.1.1,e.8.1.7 138284,138285 1qf6A 642 13.33 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1pjqA 457 14.40 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1v7wA 807 14.66 a.102.1.4,b.30.5.3 108411,108412 1vlbA 907 15.53 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2dr1A 386 15.60 1p5dX 463 15.62 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ozhA 566 16.65 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2fuvA 549 16.92 2qryA 330 17.17 2driA 271 18.74 c.93.1.1 35637 3cs3A 277 19.34 2zg5A 397 19.42 1d3gA 367 21.35 c.1.4.1 28600 1k2yX 463 21.37 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2z9wA 392 21.48 1h0hA 977 21.96 b.52.2.2,c.81.1.1 76435,76436 1gudA 288 22.66 c.93.1.1 83326 3brsA 289 24.72 1f0kA 364 25.08 c.87.1.2 35465 2h2zA 306 25.15 2vj8A 611 25.77 1jeoA 180 25.95 c.80.1.3 66611 2gcgA 330 26.82 1m32A 366 27.18 c.67.1.3 78508 1xf1A 926 27.35 1ynuA 473 28.18 c.67.1.4 123762 1wqaA 455 28.63 2dri 271 28.76 2vgbA 528 29.25 2rjoA 332 29.47 2novA 496 29.83 1wyuA 438 30.21 c.67.1.7 121452 2qu7A 288 31.64 1qmgA 524 31.72 a.100.1.2,c.2.1.6 18785,30182 1sc6A 404 32.05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1b8gA 429 32.34 c.67.1.4 34499 1bif 469 32.66 1j4aA 333 32.98 c.2.1.4,c.23.12.1 71502,71503 1owlA 484 33.52 a.99.1.1,c.28.1.1 93647,93648 2nacA 393 33.63 c.2.1.4,c.23.12.1 30088,31348 1d4aA 273 34.18 c.23.5.3 31219 2oq2A 261 37.51 2bklA 695 38.34 1jihA 531 39.46 d.240.1.1,e.8.1.7 90374,90375 2jbwA 386 40.19 3beoA 375 42.71 2rgyA 290 43.28 1w5dA 462 44.42 e.3.1.3 120642 1gpjA 404 45.05 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1umdA 367 45.85 c.36.1.11 99599 1pswA 348 46.35 c.87.1.7 88287 2o6yA 521 46.38 2hufA 393 46.83 2d1gA 498 47.57 2viaA 405 48.29 2df8A 325 48.82 2napA 723 49.10 b.52.2.2,c.81.1.1 26926,35334 2cunA 410 49.39 1lwjA 441 50.77 b.71.1.1,c.1.8.1 74303,74304 1q6zA 528 51.03 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 3bi1A 709 51.19 7aatA 401 51.30 c.67.1.1 34250 2oi2A 292 51.47 2v3gA 283 52.47 1gdhA 320 52.92 c.2.1.4,c.23.12.1 30095,31355 1bifA 469 52.92 c.37.1.7,c.60.1.4 31961,34003 3bblA 287 53.29 1x9iA 302 53.86 c.80.1.1 114997 2a3nA 355 54.15 8abp 306 54.58 2uz1A 563 55.34 1gca 309 55.83 1d2fA 390 56.20 c.67.1.3 34411 2o1eA 312 57.54 2iksA 293 57.71 1tlfA 301 58.97 c.93.1.1 35687 1eg5A 384 59.03 c.67.1.3 34429 2gt1A 326 59.47 1s0aA 429 59.69 c.67.1.4 98263 2e3jA 356 61.66 2g1iA 563 62.30 1m3sA 186 63.47 c.80.1.3 78573 2ac2A 309 63.97 1up7A 417 64.99 c.2.1.5,d.162.1.2 113374,113375 1f6dA 376 65.49 c.87.1.3 35467 1xngA 268 66.29 c.26.2.1 122186 2h0aA 276 66.93 2e18A 257 68.07 2yrrA 353 68.57 2gwnA 452 69.31 1np7A 489 69.53 a.99.1.1,c.28.1.1 80677,80678 1dbqA 289 69.63 c.93.1.1 35666 2o20A 332 70.33 2p10A 286 71.88 1vimA 200 72.60 c.80.1.3 100758 2gs8A 317 73.79 2ioyA 283 74.09 1ps9A 671 74.60 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1kolA 398 75.38 b.35.1.2,c.2.1.1 77474,77475 2jfuA 291 77.03 1elqA 390 77.14 c.67.1.3 34436 2gruA 368 77.91 2z5lA 511 78.11 2hqbA 296 79.27 3bilA 348 79.59 1wxiA 275 79.82 c.26.2.1 121400 1i1wA 303 80.68 c.1.8.3 76732 1arsA 396 82.12 c.67.1.1 34287 1t3gA 159 82.33 2p67A 341 82.34 1xdwA 331 84.57 1vpdA 299 84.96 a.100.1.1,c.2.1.6 113951,113952 2o1sA 621 85.58 1cs1A 386 86.03 c.67.1.3 34399 2aaa 484 86.57 1a04A 215 86.77 a.4.6.2,c.23.1.1 16234,31089 2ejaA 338 88.01 1byiA 224 88.34 c.37.1.10 32199 1zy9A 564 88.65 b.30.5.11,c.1.8.13 125813,125814 1ush 550 88.77