# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.05e-29 c.107.1.1 68027 1i74A 309 3.72e-28 c.107.1.1 61867 1ir6A 424 1.37e-27 c.107.1.2 71342 2eb0A 307 1.85e-26 2qb7A 397 3.26e-20 1wpnA 188 3.45e-17 c.107.1.1 114826 2fepA 289 1.320 1vljA 407 1.447 e.22.1.2 108832 1ynuA 473 3.138 c.67.1.4 123762 2rgyA 290 3.165 1pjqA 457 3.297 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1jeoA 180 3.626 c.80.1.3 66611 3cs3A 277 3.659 2z9wA 392 3.971 2driA 271 4.000 c.93.1.1 35637 1rrmA 386 4.137 e.22.1.2 105081 1qs0B 338 5.468 c.36.1.7,c.48.1.2 31830,33103 2dri 271 5.651 3bblA 287 5.826 3brsA 289 6.177 1gudA 288 6.251 c.93.1.1 83326 2oq2A 261 6.418 1m32A 366 7.482 c.67.1.3 78508 1f0kA 364 8.116 c.87.1.2 35465 2dr1A 386 8.227 2qu7A 288 8.800 2hufA 393 9.107 2jbwA 386 9.276 1rzuA 485 10.27 c.87.1.8 105140 2q28A 564 11.03 2j6iA 364 11.18 1wuuA 399 12.34 d.14.1.5,d.58.26.7 114900,114901 1b8gA 429 13.74 c.67.1.4 34499 1gdhA 320 14.22 c.2.1.4,c.23.12.1 30095,31355 2fvyA 309 14.26 c.93.1.1 134227 3c3kA 285 14.30 1d2fA 390 15.20 c.67.1.3 34411 1iugA 352 15.28 c.67.1.3 90699 2iksA 293 15.71 1qz9A 416 16.71 c.67.1.3 96621 2a3nA 355 17.22 1d3gA 367 17.46 c.1.4.1 28600 1lc5A 364 18.05 c.67.1.1 73827 1wxiA 275 18.42 c.26.2.1 121400 1gpjA 404 18.52 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2gs8A 317 18.68 2gt1A 326 19.61 2fssA 365 19.82 2iw1A 374 19.98 c.87.1.8 137738 1gca 309 21.04 1xngA 268 21.09 c.26.2.1 122186 1tlfA 301 21.10 c.93.1.1 35687 1m22A 503 21.21 c.117.1.1 78464 1ozhA 566 22.56 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1m3sA 186 23.67 c.80.1.3 78573 2v3gA 283 23.80 1dvjA 246 23.84 c.1.2.3 28546 3ctpA 330 23.92 2ay1A 394 23.94 c.67.1.1 34357 2o20A 332 24.45 1bw0A 416 24.72 c.67.1.1 34385 3bilA 348 24.74 1vimA 200 25.16 c.80.1.3 100758 1t3gA 159 25.37 2dejA 350 25.37 3beoA 375 26.69 1sc6A 404 27.34 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1q0qA 406 27.42 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1dbqA 289 28.29 c.93.1.1 35666 8abp 306 28.30 1qmgA 524 29.51 a.100.1.2,c.2.1.6 18785,30182 1p5dX 463 30.20 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1gdeA 389 30.95 c.67.1.1 60456 1k2yX 463 31.38 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1c7nA 399 31.52 c.67.1.3 34413 1byiA 224 32.37 c.37.1.10 32199 2fn9A 290 32.76 1poxA 585 33.13 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1wqaA 455 33.76 1vjoA 393 33.91 c.67.1.3 100827 1j5xA 342 33.99 c.80.1.1 71591 1eg5A 384 34.78 c.67.1.3 34429 2zg5A 397 35.74 1vp4A 425 37.03 c.67.1.1 113935 1bjwA 382 37.30 c.67.1.1 34349 2dplA 308 37.63 1o4sA 389 37.81 c.67.1.1 86620 2df8A 325 37.98 2gcgA 330 38.46 2yrrA 353 38.79 2ioyA 283 38.98 1bykA 255 39.48 c.93.1.1 35706 1e5dA 402 40.15 c.23.5.1,d.157.1.3 31208,42061 2p10A 286 40.55 1dxy 333 40.69 2jfuA 291 41.14 1ko7A 314 42.73 c.98.2.1,c.91.1.2 72797,72798 2fuvA 549 42.79 1kkhA 317 43.02 d.14.1.5,d.58.26.3 72645,72646 2infA 359 43.46 2bwnA 401 43.85 c.67.1.4 129368 1x9iA 302 45.41 c.80.1.1 114997 2uzhA 165 45.58 3cogA 403 45.69 1a04A 215 46.24 a.4.6.2,c.23.1.1 16234,31089 2rjoA 332 48.15 2p1zA 180 48.73 2c31A 568 48.89 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2i2wA 212 49.26 1eluA 390 49.87 c.67.1.3 34434 2r2nA 425 50.45 1surA 215 50.93 c.26.2.2 31620 1js3A 486 51.06 c.67.1.6 67215 2oi2A 292 52.90 1fwkA 296 54.16 d.14.1.5,d.58.26.1 37576,39398 3brqA 296 54.87 2qwwA 154 55.25 1m6sA 347 55.41 c.67.1.1 78701 1jftA 340 55.46 a.35.1.5,c.93.1.1 66652,66653 1arsA 396 56.11 c.67.1.1 34287 1kmkA 406 56.13 c.67.1.3 68696 1u08A 386 56.55 c.67.1.1 107543 1jg8A 347 57.37 c.67.1.1 62946 1xizA 159 58.73 d.112.1.1 115375 2akoA 251 59.08 c.73.1.3 126923 1khtA 192 59.38 c.37.1.1 84401 1t8tA 271 59.93 c.37.1.5 106685 2dwuA 276 60.05 2q7wA 396 60.06 1oi7A 288 60.11 c.2.1.8,c.23.4.1 87049,87050 2h0aA 276 61.04 1pieA 419 61.27 d.14.1.5,d.58.26.7 94706,94707 1umdA 367 61.49 c.36.1.11 99599 2i7vA 459 62.25 1pswA 348 63.03 c.87.1.7 88287 1x92A 199 63.15 c.80.1.3 114976 2d59A 144 63.51 c.2.1.8 131266 2e18A 257 63.55 1vpvA 300 63.60 c.119.1.1 113975 1j0aA 325 63.72 c.79.1.1 83871 1jyeA 349 63.88 c.93.1.1 67455 3c6qA 311 64.82 1q6zA 528 65.00 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1yqgA 263 65.24 2a1fA 247 65.75 c.73.1.3 125991 1i36A 264 66.06 a.100.1.8,c.2.1.6 71108,71109 1p3wA 404 66.54 c.67.1.3 87752 1u6zA 513 67.61 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1tibA 269 67.65 c.69.1.17 34738 1uk8A 282 69.57 c.69.1.10 107907 2csuA 457 69.86 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2gekA 406 70.03 2ahrA 259 70.77 a.100.1.10,c.2.1.6 126775,126776 1y2mA 716 70.86 1np3A 338 71.63 a.100.1.2,c.2.1.6 85946,85947 1uu1A 335 72.73 c.67.1.1 99993 1zclA 180 74.50 2qs9A 194 75.43 2nlyA 245 75.64 c.6.2.7 138364 2o1eA 312 76.53 2eq5A 228 77.33 2brxA 244 79.31 c.73.1.3 129028 1u02A 239 79.60 c.108.1.15 107538 1y37A 304 80.29 1ybhA 590 81.04 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1mgpA 313 81.96 c.119.1.1 79098 2z1yA 397 82.31 2yvaA 196 83.16 1wd7A 261 83.92 c.113.1.1 114526 2a2cA 478 85.71 1zunA 325 85.98 c.26.2.2 125676 2qs7A 144 88.64