# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.04e-30 c.107.1.1 68027 1i74A 309 2.35e-28 c.107.1.1 61867 1ir6A 424 6.00e-28 c.107.1.2 71342 2eb0A 307 1.17e-26 2qb7A 397 1.24e-20 1wpnA 188 6.07e-17 c.107.1.1 114826 1vljA 407 1.456 e.22.1.2 108832 1ynuA 473 1.584 c.67.1.4 123762 2z9wA 392 2.207 1d2fA 390 3.658 c.67.1.3 34411 1b8gA 429 4.319 c.67.1.4 34499 1rrmA 386 4.927 e.22.1.2 105081 1m32A 366 5.096 c.67.1.3 78508 2driA 271 5.816 c.93.1.1 35637 1wuuA 399 6.208 d.14.1.5,d.58.26.7 114900,114901 2fepA 289 6.276 3cs3A 277 6.379 2j6iA 364 7.080 2gs8A 317 7.400 2oq2A 261 7.402 1gpjA 404 7.779 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2dri 271 7.848 2dr1A 386 8.256 2rgyA 290 8.679 1rzuA 485 8.874 c.87.1.8 105140 1qmgA 524 9.010 a.100.1.2,c.2.1.6 18785,30182 2hufA 393 10.88 1iugA 352 11.99 c.67.1.3 90699 1qs0B 338 12.12 c.36.1.7,c.48.1.2 31830,33103 1kmkA 406 12.29 c.67.1.3 68696 1owlA 484 12.59 a.99.1.1,c.28.1.1 93647,93648 1jeoA 180 13.71 c.80.1.3 66611 1surA 215 14.19 c.26.2.2 31620 2fssA 365 14.44 2ay1A 394 16.14 c.67.1.1 34357 1gudA 288 16.38 c.93.1.1 83326 1t8tA 271 17.53 c.37.1.5 106685 3bblA 287 19.63 1y37A 304 20.02 1gdhA 320 20.42 c.2.1.4,c.23.12.1 30095,31355 1x9iA 302 20.95 c.80.1.1 114997 2qu7A 288 22.99 1lc5A 364 23.56 c.67.1.1 73827 2bwnA 401 23.98 c.67.1.4 129368 2v3gA 283 25.06 2i7vA 459 25.43 2iksA 293 25.76 2c31A 568 25.78 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2jbwA 386 25.83 1c7nA 399 26.23 c.67.1.3 34413 3beoA 375 26.30 1m6sA 347 26.44 c.67.1.1 78701 2q28A 564 26.57 3brsA 289 27.45 2dplA 308 28.56 1tlfA 301 29.49 c.93.1.1 35687 1pjqA 457 29.56 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2pocA 367 30.33 1p3wA 404 30.61 c.67.1.3 87752 1jg8A 347 31.50 c.67.1.1 62946 2yrrA 353 31.68 2qryA 330 33.93 1fwkA 296 35.00 d.14.1.5,d.58.26.1 37576,39398 1qz9A 416 35.79 c.67.1.3 96621 2o20A 332 36.96 2o2gA 223 37.18 1eluA 390 37.19 c.67.1.3 34434 1uu1A 335 37.54 c.67.1.1 99993 1q0qA 406 37.55 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1kkhA 317 37.68 d.14.1.5,d.58.26.3 72645,72646 2gcgA 330 39.20 1gdeA 389 39.44 c.67.1.1 60456 1pmmA 466 39.65 c.67.1.6 94901 1dbqA 289 39.84 c.93.1.1 35666 1mtzA 293 40.97 c.69.1.7 79467 3c3kA 285 41.21 2nacA 393 41.40 c.2.1.4,c.23.12.1 30088,31348 2uzhA 165 42.16 1uk8A 282 43.03 c.69.1.10 107907 1e5dA 402 43.73 c.23.5.1,d.157.1.3 31208,42061 1arsA 396 44.53 c.67.1.1 34287 1cl1A 395 44.55 c.67.1.3 34395 1kl1A 419 44.60 c.67.1.4 72663 2hkeA 380 44.94 1xngA 268 45.43 c.26.2.1 122186 2iuyA 342 45.45 2dejA 350 46.43 2oi2A 292 46.82 1bykA 255 48.22 c.93.1.1 35706 1t3gA 159 48.69 8abp 306 48.88 2e9xC 219 49.16 1o4sA 389 49.35 c.67.1.1 86620 1ko7A 314 50.06 c.98.2.1,c.91.1.2 72797,72798 1u08A 386 50.82 c.67.1.1 107543 1y2mA 716 50.84 1vpvA 300 51.19 c.119.1.1 113975 1m22A 503 51.24 c.117.1.1 78464 1bw0A 416 51.60 c.67.1.1 34385 2df8A 325 53.85 1bjwA 382 53.97 c.67.1.1 34349 1c4xA 285 54.25 c.69.1.10 34684 2c0rA 362 54.85 c.67.1.4 129604 1moqA 368 55.59 c.80.1.1 35302 1wy5A 317 56.70 c.26.2.5,d.229.1.1 121428,121429 1ozhA 566 56.82 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2gt1A 326 58.01 1gca 309 58.50 2viaA 405 58.83 1elqA 390 58.98 c.67.1.3 34436 2az4A 429 61.84 d.157.1.10 127597 1f0kA 364 62.21 c.87.1.2 35465 1eg5A 384 62.68 c.67.1.3 34429 1ibjA 464 62.96 c.67.1.3 62162 7aatA 401 63.50 c.67.1.1 34250 1m7yA 435 63.53 c.67.1.4 78761 2qs9A 194 63.75 2h0aA 276 63.76 1sc6A 404 64.29 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2p1zA 180 65.20 2bkwA 385 66.61 c.67.1.3 128714 1j5xA 342 66.69 c.80.1.1 71591 1qtrA 317 66.74 c.69.1.7 34660 1bn7A 294 66.85 c.69.1.8 34677 2fn9A 290 67.58 2c0cA 362 68.15 1wqaA 455 68.20 1js3A 486 68.24 c.67.1.6 67215 1wxiA 275 68.53 c.26.2.1 121400 1zclA 180 68.85 1d3gA 367 70.44 c.1.4.1 28600 2nlyA 245 70.59 c.6.2.7 138364 1wyuB 474 71.31 c.67.1.7 121453 2fyfA 398 72.59 1k47A 337 72.72 d.14.1.5,d.58.26.4 72040,72041 1poxA 585 73.09 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1wm1A 317 73.56 c.69.1.7 109405 1yhvA 297 74.50 1dvjA 246 74.90 c.1.2.3 28546 2o1eA 312 75.04 1pieA 419 75.45 d.14.1.5,d.58.26.7 94706,94707 2bklA 695 75.90 2iw1A 374 76.33 c.87.1.8 137738 2pk3A 321 76.94 3c4vA 426 77.32 1pot 325 79.65 2o7cA 398 79.88 1qlwA 328 80.01 c.69.1.15 34722 3cogA 403 80.91 2q7wA 396 81.25 3caiA 406 81.39 1lwjA 441 81.41 b.71.1.1,c.1.8.1 74303,74304 2a2cA 478 84.59 2h2zA 306 84.93 2csuA 457 85.54 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vjoA 393 85.63 c.67.1.3 100827 2r2nA 425 86.18 2cstA 411 88.44 c.67.1.1 34273 2fvyA 309 89.90 c.93.1.1 134227 1bia 321 89.96