# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.27e-29 c.107.1.1 68027 1i74A 309 3.14e-27 c.107.1.1 61867 1ir6A 424 5.02e-27 c.107.1.2 71342 2eb0A 307 1.07e-25 2qb7A 397 2.11e-19 1wpnA 188 3.08e-17 c.107.1.1 114826 1vljA 407 1.519 e.22.1.2 108832 3cs3A 277 1.904 2gs8A 317 2.441 1rrmA 386 2.503 e.22.1.2 105081 2fepA 289 2.527 2rgyA 290 2.906 1d2fA 390 3.480 c.67.1.3 34411 2z9wA 392 3.676 1ynuA 473 4.179 c.67.1.4 123762 2dr1A 386 4.603 1iugA 352 4.970 c.67.1.3 90699 2driA 271 6.091 c.93.1.1 35637 3bblA 287 6.474 2gt1A 326 6.799 1jeoA 180 6.996 c.80.1.3 66611 2oq2A 261 7.022 1qmgA 524 7.231 a.100.1.2,c.2.1.6 18785,30182 1b8gA 429 7.253 c.67.1.4 34499 2dejA 350 7.370 1rzuA 485 7.606 c.87.1.8 105140 2j6iA 364 7.612 1wuuA 399 7.780 d.14.1.5,d.58.26.7 114900,114901 1gpjA 404 7.905 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1pieA 419 8.028 d.14.1.5,d.58.26.7 94706,94707 1qs0B 338 8.542 c.36.1.7,c.48.1.2 31830,33103 1m32A 366 8.682 c.67.1.3 78508 2dri 271 8.696 1gudA 288 8.709 c.93.1.1 83326 2o20A 332 10.76 1pjqA 457 11.99 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2hufA 393 12.45 2iw1A 374 13.94 c.87.1.8 137738 1y2mA 716 15.92 1m22A 503 17.84 c.117.1.1 78464 3c3kA 285 17.98 1surA 215 18.20 c.26.2.2 31620 1gca 309 18.32 3brsA 289 18.78 2qu7A 288 19.42 1f0kA 364 19.59 c.87.1.2 35465 2fvyA 309 19.85 c.93.1.1 134227 2oi2A 292 20.12 2jbwA 386 20.30 3beoA 375 21.06 2fssA 365 21.27 1vjoA 393 21.30 c.67.1.3 100827 1kkhA 317 21.72 d.14.1.5,d.58.26.3 72645,72646 2ay1A 394 22.25 c.67.1.1 34357 1gdeA 389 22.43 c.67.1.1 60456 3bilA 348 22.56 1ahxA 396 22.61 c.67.1.1 34293 2bwnA 401 24.59 c.67.1.4 129368 1d3gA 367 25.67 c.1.4.1 28600 1c7nA 399 25.91 c.67.1.3 34413 1m6sA 347 26.15 c.67.1.1 78701 2q28A 564 27.89 1xngA 268 28.01 c.26.2.1 122186 1q0qA 406 28.58 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1bw0A 416 29.18 c.67.1.1 34385 1wy5A 317 29.85 c.26.2.5,d.229.1.1 121428,121429 1jg8A 347 30.08 c.67.1.1 62946 2a3nA 355 30.35 1x9iA 302 30.50 c.80.1.1 114997 3c4vA 426 31.97 2yrrA 353 32.18 2e87A 357 32.52 3ctpA 330 32.53 1uu1A 335 32.54 c.67.1.1 99993 1lc5A 364 32.90 c.67.1.1 73827 2fn9A 290 33.04 1fwkA 296 33.90 d.14.1.5,d.58.26.1 37576,39398 3brqA 296 34.55 2iksA 293 34.59 1m3sA 186 35.73 c.80.1.3 78573 2r2nA 425 36.16 1zunA 325 36.32 c.26.2.2 125676 1u08A 386 36.86 c.67.1.1 107543 1iirA 415 37.49 c.87.1.5 62453 1t8tA 271 37.60 c.37.1.5 106685 1tlfA 301 37.72 c.93.1.1 35687 1o4sA 389 37.84 c.67.1.1 86620 1dbqA 289 38.23 c.93.1.1 35666 2hkeA 380 38.31 1moqA 368 38.32 c.80.1.1 35302 1vpvA 300 39.54 c.119.1.1 113975 1bykA 255 39.65 c.93.1.1 35706 3cogA 403 40.64 1y37A 304 41.33 1k47A 337 42.40 d.14.1.5,d.58.26.4 72040,72041 1zclA 180 46.05 2uzhA 165 46.24 1e5dA 402 47.27 c.23.5.1,d.157.1.3 31208,42061 2ioyA 283 47.48 2o7cA 398 47.55 1vimA 200 47.68 c.80.1.3 100758 8abp 306 47.72 2a2cA 478 47.79 2qs9A 194 48.56 2o2gA 223 50.68 1bjwA 382 50.84 c.67.1.1 34349 1sc6A 404 51.22 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2jfuA 291 52.11 1gdhA 320 52.58 c.2.1.4,c.23.12.1 30095,31355 2r0bA 154 53.24 1t3gA 159 53.45 1pswA 348 54.54 c.87.1.7 88287 1jyeA 349 55.64 c.93.1.1 67455 1kvkA 395 55.71 d.14.1.5,d.58.26.3 73060,73061 1arsA 396 56.53 c.67.1.1 34287 1j5xA 342 58.26 c.80.1.1 71591 2e9xC 219 59.01 2pg9A 337 59.32 2cb0A 333 59.59 2pocA 367 60.35 1m7yA 435 61.58 c.67.1.4 78761 1pmmA 466 63.80 c.67.1.6 94901 2q0xA 335 64.37 3tmkA 216 65.72 c.37.1.1 31920 1mtzA 293 65.88 c.69.1.7 79467 1vp4A 425 68.60 c.67.1.1 113935 1vpdA 299 68.89 a.100.1.1,c.2.1.6 113951,113952 1cl1A 395 70.24 c.67.1.3 34395 1u02A 239 70.77 c.108.1.15 107538 1u6zA 513 71.32 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2c31A 568 72.80 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2h0aA 276 73.67 2va8A 715 75.58 2ewsA 287 76.35 1wyuA 438 76.39 c.67.1.7 121452 2zg5A 397 76.44 1lucA 355 76.89 c.1.16.1 29547 1c4xA 285 77.31 c.69.1.10 34684 2o4cA 380 77.31 1j0aA 325 77.52 c.79.1.1 83871 2fhxA 246 78.54 2p1zA 180 78.76 1xizA 159 80.00 d.112.1.1 115375 1jftA 340 80.14 a.35.1.5,c.93.1.1 66652,66653 2iuyA 342 80.82 1mgpA 313 81.65 c.119.1.1 79098 2qryA 330 81.99 1wqaA 455 82.81 1wxiA 275 83.51 c.26.2.1 121400 1p3wA 404 83.63 c.67.1.3 87752 1kmkA 406 85.37 c.67.1.3 68696 2dplA 308 86.03 1ko7A 314 86.11 c.98.2.1,c.91.1.2 72797,72798 2ax4A 198 86.16 1lu4A 136 86.73 c.47.1.10 91124 1s3jA 155 87.25 a.4.5.28 98437 1i36A 264 87.29 a.100.1.8,c.2.1.6 71108,71109 1eg5A 384 87.77 c.67.1.3 34429 1ibjA 464 88.18 c.67.1.3 62162 2qiwA 255 88.87 2df8A 325 89.15 1wwkA 307 89.57