# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.02e-31 c.107.1.1 68027 1i74A 309 1.69e-29 c.107.1.1 61867 1ir6A 424 2.10e-29 c.107.1.2 71342 2eb0A 307 6.71e-28 2qb7A 397 8.46e-21 1wpnA 188 1.81e-18 c.107.1.1 114826 1vljA 407 1.240 e.22.1.2 108832 1rrmA 386 2.044 e.22.1.2 105081 3cs3A 277 2.352 1ynuA 473 2.650 c.67.1.4 123762 2gs8A 317 3.301 2rgyA 290 3.916 1d2fA 390 4.569 c.67.1.3 34411 2z9wA 392 4.599 1gpjA 404 4.777 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2fepA 289 4.897 1qmgA 524 5.457 a.100.1.2,c.2.1.6 18785,30182 2driA 271 5.894 c.93.1.1 35637 1jeoA 180 7.244 c.80.1.3 66611 1pieA 419 7.657 d.14.1.5,d.58.26.7 94706,94707 1qs0B 338 7.777 c.36.1.7,c.48.1.2 31830,33103 1wuuA 399 7.941 d.14.1.5,d.58.26.7 114900,114901 2dejA 350 8.145 1pjqA 457 8.450 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1gudA 288 8.538 c.93.1.1 83326 2oq2A 261 8.599 2dri 271 8.620 1b8gA 429 8.644 c.67.1.4 34499 2j6iA 364 8.940 3bblA 287 10.76 1m22A 503 11.77 c.117.1.1 78464 1iugA 352 12.07 c.67.1.3 90699 1surA 215 12.15 c.26.2.2 31620 2gt1A 326 12.61 2dr1A 386 12.87 1uu1A 335 13.94 c.67.1.1 99993 1f0kA 364 14.48 c.87.1.2 35465 1gca 309 14.88 1rzuA 485 15.24 c.87.1.8 105140 1m32A 366 15.30 c.67.1.3 78508 2hufA 393 15.33 2bwnA 401 15.36 c.67.1.4 129368 2iksA 293 15.89 2jbwA 386 16.29 2fssA 365 16.74 2fvyA 309 16.94 c.93.1.1 134227 1sc6A 404 17.58 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xngA 268 17.62 c.26.2.1 122186 3c3kA 285 18.89 1x9iA 302 19.12 c.80.1.1 114997 1bw0A 416 19.16 c.67.1.1 34385 3brsA 289 19.38 2o20A 332 20.17 2qu7A 288 20.46 1c7nA 399 21.55 c.67.1.3 34413 8abp 306 22.55 3beoA 375 23.16 1kkhA 317 23.61 d.14.1.5,d.58.26.3 72645,72646 2q28A 564 24.19 2ay1A 394 24.74 c.67.1.1 34357 1q0qA 406 25.07 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1ahxA 396 25.78 c.67.1.1 34293 1gdeA 389 26.70 c.67.1.1 60456 1lc5A 364 28.31 c.67.1.1 73827 2o2gA 223 29.29 1o4sA 389 29.78 c.67.1.1 86620 2oi2A 292 30.35 3c4vA 426 31.63 1kmkA 406 32.66 c.67.1.3 68696 1m6sA 347 33.51 c.67.1.1 78701 1tlfA 301 33.54 c.93.1.1 35687 2fn9A 290 34.00 1dbqA 289 34.39 c.93.1.1 35666 1gdhA 320 34.55 c.2.1.4,c.23.12.1 30095,31355 1vpvA 300 35.04 c.119.1.1 113975 1jg8A 347 35.22 c.67.1.1 62946 1zclA 180 36.65 1e5dA 402 36.72 c.23.5.1,d.157.1.3 31208,42061 2ax4A 198 37.97 3bilA 348 38.18 1y2mA 716 38.46 2uzhA 165 39.28 2h0aA 276 39.35 1moqA 368 39.49 c.80.1.1 35302 1ko7A 314 39.72 c.98.2.1,c.91.1.2 72797,72798 3brqA 296 40.66 2yrrA 353 40.97 1zunA 325 41.79 c.26.2.2 125676 1j5xA 342 41.89 c.80.1.1 71591 3cogA 403 42.04 1bykA 255 42.10 c.93.1.1 35706 1vjoA 393 42.88 c.67.1.3 100827 1wyuA 438 43.13 c.67.1.7 121452 1u6zA 513 43.39 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2i7vA 459 43.74 1wy5A 317 44.75 c.26.2.5,d.229.1.1 121428,121429 1qz9A 416 45.21 c.67.1.3 96621 1eg5A 384 45.38 c.67.1.3 34429 1mgpA 313 45.56 c.119.1.1 79098 2e9xC 219 45.62 3ctpA 330 45.93 1d3gA 367 45.95 c.1.4.1 28600 2r2nA 425 46.57 1bjwA 382 48.94 c.67.1.1 34349 1qtrA 317 49.17 c.69.1.7 34660 1u08A 386 50.58 c.67.1.1 107543 1m3sA 186 50.62 c.80.1.3 78573 1y37A 304 50.81 2ioyA 283 51.23 2o1eA 312 51.32 1t8tA 271 51.60 c.37.1.5 106685 3tmkA 216 51.70 c.37.1.1 31920 2o7cA 398 52.42 2hkeA 380 52.42 2d0iA 333 52.49 1u5kA 244 52.74 b.40.4.13,g.45.1.2 113038,113039 1wxiA 275 53.35 c.26.2.1 121400 2a2cA 478 53.67 1kvkA 395 54.06 d.14.1.5,d.58.26.3 73060,73061 1wd7A 261 54.56 c.113.1.1 114526 2ejaA 338 54.80 2p1zA 180 54.87 2q0xA 335 54.90 2v3gA 283 54.99 2df8A 325 56.16 2pg9A 337 56.89 1fwkA 296 57.04 d.14.1.5,d.58.26.1 37576,39398 1arsA 396 58.49 c.67.1.1 34287 1vimA 200 60.15 c.80.1.3 100758 2fhxA 246 60.16 2iw1A 374 60.67 c.87.1.8 137738 1pswA 348 60.98 c.87.1.7 88287 2amlA 373 62.67 2gcgA 330 62.68 1i1wA 303 62.86 c.1.8.3 76732 1uk8A 282 63.57 c.69.1.10 107907 1iirA 415 65.29 c.87.1.5 62453 1p3wA 404 66.38 c.67.1.3 87752 2va8A 715 67.45 2pjdA 343 67.80 2bkwA 385 68.76 c.67.1.3 128714 1n4aA 252 68.84 c.92.2.2 85317 2cb0A 333 69.85 1yzyA 413 70.15 c.146.1.1 124292 2qwwA 154 70.41 2gh1A 301 70.81 c.66.1.49 135170 1t3gA 159 70.84 2qryA 330 71.33 1a04A 215 72.41 a.4.6.2,c.23.1.1 16234,31089 1qdeA 224 72.99 c.37.1.19 32410 1u02A 239 73.16 c.108.1.15 107538 2e87A 357 74.04 1sur 215 74.82 1s3jA 155 75.14 a.4.5.28 98437 1pzxA 289 75.27 c.119.1.1 95484 2pk3A 321 76.50 1np3A 338 76.59 a.100.1.2,c.2.1.6 85946,85947 1vpdA 299 76.90 a.100.1.1,c.2.1.6 113951,113952 1c4xA 285 77.64 c.69.1.10 34684 2jfuA 291 77.92 1jyeA 349 78.07 c.93.1.1 67455 1kgsA 225 79.51 a.4.6.1,c.23.1.1 68596,68597 1p5dX 463 79.82 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1cl1A 395 80.22 c.67.1.3 34395 2hfsA 332 80.22 1dxy 333 80.23 2nlyA 245 80.76 c.6.2.7 138364 1k47A 337 81.54 d.14.1.5,d.58.26.4 72040,72041 2q7wA 396 82.18 1wwkA 307 82.38 1k2yX 463 83.22 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2g7zA 282 83.46 2akoA 251 83.65 c.73.1.3 126923 2ez2A 456 84.48 1mtzA 293 85.21 c.69.1.7 79467 1ak2A 233 86.11 c.37.1.1,g.41.2.1 31894,45195 1lucA 355 86.30 c.1.16.1 29547 2dplA 308 87.34 2o4cA 380 88.24 2cstA 411 89.04 c.67.1.1 34273 1b9hA 388 89.25 c.67.1.4 34488 2ahrA 259 89.98 a.100.1.10,c.2.1.6 126775,126776