# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k20A	310	2.07e-26	c.107.1.1	68027
1ir6A	424	3.00e-26	c.107.1.2	71342
1i74A	309	2.42e-25	c.107.1.1	61867
2eb0A	307	3.73e-23		
2qb7A	397	8.76e-20		
1wpnA	188	3.46e-17	c.107.1.1	114826
2qu7A	288	1.347		
2rgyA	290	1.967		
2df8A	325	2.372		
1j5xA	342	2.491	c.80.1.1	71591
3beoA	375	2.646		
2pocA	367	2.976		
1tlfA	301	3.524	c.93.1.1	35687
1rrmA	386	4.147	e.22.1.2	105081
1vljA	407	4.738	e.22.1.2	108832
1moq	368	4.867		
3bf7A	255	5.123		
2amlA	373	5.327		
2e5fA	325	5.400		
1wy5A	317	5.990	c.26.2.5,d.229.1.1	121428,121429
2cb0A	333	6.176		
1moqA	368	6.237	c.80.1.1	35302
2px6A	316	6.504		
2gwhA	298	6.769		
1x9iA	302	7.017	c.80.1.1	114997
2o20A	332	7.624		
2fepA	289	8.418		
1kl1A	419	8.419	c.67.1.4	72663
8abpA	306	8.775	c.93.1.1	35647
2a3nA	355	9.232		
8abp	306	9.447		
2fn9A	290	11.72		
3bwxA	285	11.99		
3cs3A	277	12.18		
1qs0B	338	12.22	c.36.1.7,c.48.1.2	31830,33103
1aquA	297	12.77	c.37.1.5	31942
1uu1A	335	12.93	c.67.1.1	99993
2driA	271	14.08	c.93.1.1	35637
1r7mA	235	14.20	d.95.2.1,d.95.2.1	111713,111714
1t8tA	271	14.57	c.37.1.5	106685
1jmkC	230	15.82	c.69.1.22	71747
2dri	271	17.05		
1oaaA	259	18.08	c.2.1.2	29829
2ahrA	259	18.96	a.100.1.10,c.2.1.6	126775,126776
1xngA	268	19.11	c.26.2.1	122186
1rzuA	485	19.34	c.87.1.8	105140
3brsA	289	19.57		
3bilA	348	20.57		
1d2fA	390	21.10	c.67.1.3	34411
1o4sA	389	22.06	c.67.1.1	86620
1kqpA	271	22.28	c.26.2.1	72883
2e18A	257	23.33		
3ctpA	330	23.42		
2ay1A	394	23.95	c.67.1.1	34357
1bykA	255	23.95	c.93.1.1	35706
1u2eA	289	24.63		
1gudA	288	24.68	c.93.1.1	83326
2afhE	289	25.11	c.37.1.10	126683
3brqA	296	26.88		
1p3dA	475	27.78	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1lc5A	364	31.10	c.67.1.1	73827
2iw1A	374	32.93	c.87.1.8	137738
3c3kA	285	36.00		
1to3A	304	36.26	c.1.10.1	107161
1gdeA	389	36.76	c.67.1.1	60456
1b6g	310	38.87		
2ioyA	283	39.94		
1j97A	211	41.66	c.108.1.4	62753
1t4bA	367	42.59	c.2.1.3,d.81.1.1	106406,106407
2iksA	293	42.77		
1womA	271	43.74		
1hp1A	516	44.65	d.114.1.1,d.159.1.2	70976,70977
1ls6A	295	45.78	c.37.1.5	91115
1b8gA	429	46.14	c.67.1.4	34499
2fvyA	309	47.53	c.93.1.1	134227
3c3jA	384	47.65		
1yzyA	413	48.24	c.146.1.1	124292
1yqgA	263	49.26		
2ewdA	317	50.74		
1dvjA	246	52.68	c.1.2.3	28546
1c7nA	399	53.08	c.67.1.3	34413
2p1zA	180	53.99		
1pzgA	331	54.24	c.2.1.5,d.162.1.1	95425,95426
3bfxA	296	54.42		
1a88A	275	54.55	c.69.1.12	34707
1uk8A	282	55.00	c.69.1.10	107907
1hkhA	279	55.40	c.69.1.12	90628
2c0rA	362	55.44	c.67.1.4	129604
2p6pA	384	55.77		
2o4cA	380	55.87		
3bblA	287	56.79		
3cklA	298	57.60		
1vj7A	393	59.22	a.211.1.1,d.218.1.8	100801,100802
1zzgA	415	59.99		
1xd8A	289	60.40		
3d1cA	369	61.18		
1pgjA	478	61.39	a.100.1.1,c.2.1.6	18783,30195
1jeoA	180	64.06	c.80.1.3	66611
2aqjA	538	65.75		
1jyeA	349	66.23	c.93.1.1	67455
2prsA	284	66.94		
2ac7A	235	67.72	c.56.2.1	126543
1brt	277	67.96		
1xrjA	261	70.50	c.37.1.6	122256
1b1cA	181	71.63	c.23.5.2	31212
1zoiA	276	74.54		
2pujA	286	74.60		
1z82A	335	75.41		
1pq4A	291	76.29	c.92.2.2	94995
3c6qA	311	76.41		
1xklA	273	76.60	c.69.1.20	115410
1pszA	303	77.21	c.92.2.2	35600
2dr1A	386	78.42		
2gh1A	301	80.69	c.66.1.49	135170
1v6sA	390	81.57	c.86.1.1	100424
1qv9A	283	81.84	c.127.1.1	96356
1lldA	319	83.24	c.2.1.5,d.162.1.1	30177,42144
1kgsA	225	83.38	a.4.6.1,c.23.1.1	68596,68597
1c4oA	664	83.61	c.37.1.19,c.37.1.19	32415,32416
1uxjA	309	83.63	c.2.1.5,d.162.1.1	108112,108113
1w23A	360	86.31	c.67.1.4	114088
3c70A	257	86.51		
2h3hA	313	87.96