# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.57e-24 c.107.1.1 68027 1i74A 309 1.70e-23 c.107.1.1 61867 1ir6A 424 2.28e-23 c.107.1.2 71342 2eb0A 307 6.09e-22 2qb7A 397 6.59e-17 1wpnA 188 8.85e-15 c.107.1.1 114826 2rgyA 290 2.664 1qs0B 338 3.612 c.36.1.7,c.48.1.2 31830,33103 2driA 271 3.861 c.93.1.1 35637 2fepA 289 3.919 2c0rA 362 4.724 c.67.1.4 129604 1yzyA 413 5.094 c.146.1.1 124292 1ynuA 473 5.857 c.67.1.4 123762 2o20A 332 6.132 3beoA 375 6.155 1b6g 310 6.391 1vljA 407 6.419 e.22.1.2 108832 2hufA 393 6.827 2fn9A 290 7.020 2iksA 293 7.712 1rrmA 386 8.182 e.22.1.2 105081 2qu7A 288 8.364 1lldA 319 8.572 c.2.1.5,d.162.1.1 30177,42144 3cs3A 277 8.983 2p1zA 180 9.674 3ctpA 330 9.873 1d2fA 390 9.97 c.67.1.3 34411 3bblA 287 10.09 2ahrA 259 10.98 a.100.1.10,c.2.1.6 126775,126776 2z06A 252 11.27 2fvyA 309 11.60 c.93.1.1 134227 3brqA 296 12.31 2q28A 564 12.59 2px6A 316 12.66 1rzuA 485 12.76 c.87.1.8 105140 2pocA 367 14.38 2dri 271 15.05 2psdA 318 16.11 1tlfA 301 17.76 c.93.1.1 35687 3c3kA 285 17.86 1wy5A 317 18.12 c.26.2.5,d.229.1.1 121428,121429 1a88A 275 19.07 c.69.1.12 34707 1t8tA 271 19.66 c.37.1.5 106685 2jbwA 386 20.20 1xklA 273 20.28 c.69.1.20 115410 2ay1A 394 20.75 c.67.1.1 34357 1gudA 288 20.89 c.93.1.1 83326 8abp 306 21.22 1moq 368 21.44 1b6gA 310 22.14 c.69.1.8 34661 3bilA 348 22.46 2df8A 325 22.49 2iw1A 374 22.71 c.87.1.8 137738 1gca 309 23.25 1ede 310 24.29 1vp4A 425 24.66 c.67.1.1 113935 1f0kA 364 24.85 c.87.1.2 35465 2p6pA 384 25.52 2h0aA 276 25.56 8abpA 306 25.88 c.93.1.1 35647 3bchA 253 25.99 2pujA 286 26.05 3bf7A 255 26.20 1d2mA 665 26.75 c.37.1.19,c.37.1.19 32417,32418 1yqgA 263 26.98 1eg5A 384 27.27 c.67.1.3 34429 2ioyA 283 27.36 1brt 277 27.41 1uxjA 309 27.60 c.2.1.5,d.162.1.1 108112,108113 2e85A 159 28.47 2ewdA 317 28.56 1umdA 367 28.67 c.36.1.11 99599 2dr1A 386 28.81 2fuvA 549 29.27 3bwxA 285 29.90 1t2dA 322 30.55 c.2.1.5,d.162.1.1 99084,99085 1uu1A 335 30.78 c.67.1.1 99993 1b8gA 429 31.20 c.67.1.4 34499 3caiA 406 31.36 1j5xA 342 31.53 c.80.1.1 71591 1pzgA 331 32.18 c.2.1.5,d.162.1.1 95425,95426 3brsA 289 33.15 1lc5A 364 37.39 c.67.1.1 73827 2a3nA 355 37.50 1hkhA 279 39.11 c.69.1.12 90628 1lzlA 323 39.41 c.69.1.2 78306 1vdmA 153 39.71 c.61.1.1 119994 1m3sA 186 39.79 c.80.1.3 78573 1gdeA 389 40.00 c.67.1.1 60456 1xqwA 293 40.05 2iuyA 342 40.39 1poxA 585 41.91 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1u2eA 289 43.07 1qmgA 524 43.69 a.100.1.2,c.2.1.6 18785,30182 1vimA 200 44.36 c.80.1.3 100758 1kyqA 274 44.60 c.2.1.11,e.37.1.1 73281,73282 1bykA 255 45.98 c.93.1.1 35706 1nriA 306 46.83 c.80.1.3 86123 1c4xA 285 46.86 c.69.1.10 34684 2rhwA 283 47.22 1evlA 401 47.24 c.51.1.1,d.104.1.1 33202,40751 1yacA 208 47.53 c.33.1.3 31757 1w23A 360 48.64 c.67.1.4 114088 3c70A 257 49.20 2e5fA 325 49.95 2a22A 215 51.24 d.159.1.7 126025 1vj7A 393 51.40 a.211.1.1,d.218.1.8 100801,100802 1xngA 268 52.44 c.26.2.1 122186 3c4vA 426 53.13 1mtzA 293 53.21 c.69.1.7 79467 1vi6A 208 54.01 c.23.15.1 100736 2o4cA 380 54.04 2yvaA 196 54.97 1zoiA 276 55.50 1bqbA 301 56.38 d.92.1.2 58962 2gekA 406 57.23 2oq2A 261 58.42 2bkwA 385 58.53 c.67.1.3 128714 1c7nA 399 59.64 c.67.1.3 34413 6ldhA 329 59.66 c.2.1.5,d.162.1.1 30161,42128 2gt1A 326 60.33 1w85A 368 61.87 c.36.1.11 114335 1ni5A 433 62.33 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1vjoA 393 62.80 c.67.1.3 100827 1uk8A 282 63.10 c.69.1.10 107907 3c24A 286 64.97 1m7yA 435 64.99 c.67.1.4 78761 2jejA 358 65.26 d.240.1.1,e.8.1.7 138284,138285 2hmvA 144 65.31 c.2.1.9 136615 2qmqA 286 66.13 1t3iA 420 66.86 c.67.1.3 106354 1hlgA 371 67.04 c.69.1.6 34656 1kgsA 225 68.15 a.4.6.1,c.23.1.1 68596,68597 2puhA 286 68.19 1qtrA 317 68.25 c.69.1.7 34660 1x92A 199 68.98 c.80.1.3 114976 1x9gA 200 69.64 c.33.1.3 109527 1t3gA 159 70.24 2rjoA 332 70.40 1jyeA 349 72.48 c.93.1.1 67455 1a8qA 274 72.78 c.69.1.12 34702 2gwhA 298 73.74 1va4A 279 74.56 c.69.1.12 108458 1oj7A 408 76.47 e.22.1.2 103971 2iyaA 424 76.62 2qiaA 262 76.69 3c85A 183 78.21 1xm7A 195 80.10 d.159.1.8 115473 2cb0A 333 80.24 1x9iA 302 81.20 c.80.1.1 114997 1v6sA 390 81.40 c.86.1.1 100424 1qj4A 257 82.55 c.69.1.20 34796 1ldg 316 82.91 2igbA 179 84.19 2dxnA 274 84.58 2vd8A 391 84.65 1jvsA 400 88.39 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1c4oA 664 89.39 c.37.1.19,c.37.1.19 32415,32416