# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.65e-09 c.107.1.2 71342 1k20A 310 1.13e-08 c.107.1.1 68027 1i74A 309 2.12e-08 c.107.1.1 61867 2eb0A 307 3.30e-07 2qb7A 397 1.93e-05 1wpnA 188 2.52e-05 c.107.1.1 114826 1sxjC 340 4.153 a.80.1.1,c.37.1.20 106085,106086 1uc8A 280 5.058 c.30.1.6,d.142.1.7 99165,99166 1iow 306 5.654 2hufA 393 5.671 1aquA 297 6.274 c.37.1.5 31942 1up7A 417 7.546 c.2.1.5,d.162.1.2 113374,113375 1ygyA 529 8.891 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1oc2A 348 10.15 c.2.1.2 92765 1dfoA 417 10.29 c.67.1.4 34480 3cklA 298 11.42 1ihoA 283 11.88 c.26.1.4 62390 2iv2X 715 13.59 b.52.2.2,c.81.1.1 137714,137715 3bh1A 507 15.01 2cmdA 312 15.23 c.2.1.5,d.162.1.1 30135,42102 1ehiA 377 15.74 c.30.1.2,d.142.1.1 31716,41484 1t4bA 367 16.43 c.2.1.3,d.81.1.1 106406,106407 3bfxA 296 16.63 2cmd 312 17.65 1p5dX 463 17.95 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2z1mA 345 18.80 2axqA 467 19.03 1g3mA 294 19.09 c.37.1.5 83268 2i87A 364 19.97 1n2eA 300 20.53 c.26.1.4 85268 1rpnA 335 21.19 c.2.1.2 97708 1v2dA 381 21.34 c.67.1.1 108281 1mb4A 370 21.62 c.2.1.3,d.81.1.1 78908,78909 2r7aA 256 21.82 1nstA 325 22.56 c.37.1.5 31951 1jg8A 347 22.66 c.67.1.1 62946 1k2yX 463 22.92 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1t2aA 375 23.11 c.2.1.2 99078 2dplA 308 23.75 2b69A 343 23.80 c.2.1.2 127974 2gwhA 298 24.13 1v8fA 276 24.46 c.26.1.4 100503 2vapA 364 25.07 1q1rA 431 25.12 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2fnuA 375 25.18 c.67.1.4 133831 1vjoA 393 25.26 c.67.1.3 100827 2z20A 432 25.31 1iowA 306 25.37 c.30.1.2,d.142.1.1 31713,41481 1o4sA 389 25.59 c.67.1.1 86620 1zrhA 274 25.83 2uuuA 584 26.59 2dtvA 397 27.00 2oatA 439 27.01 c.67.1.4 34452 1pswA 348 27.45 c.87.1.7 88287 1up6A 416 27.55 c.2.1.5,d.162.1.2 107976,107977 1o69A 394 27.86 c.67.1.4 92560 1bj4A 470 28.30 c.67.1.4 34479 1gdeA 389 28.33 c.67.1.1 60456 1t8tA 271 28.50 c.37.1.5 106685 1fmjA 351 30.84 c.37.1.5 59879 1b8gA 429 31.20 c.67.1.4 34499 1uu1A 335 33.00 c.67.1.1 99993 1kjqA 391 33.04 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2dr1A 386 33.39 2bylA 439 33.91 c.67.1.4 129490 1pq4A 291 34.03 c.92.2.2 94995 1ls6A 295 34.84 c.37.1.5 91115 1qmgA 524 35.51 a.100.1.2,c.2.1.6 18785,30182 1m6sA 347 36.34 c.67.1.1 78701 3cogA 403 36.56 1vkjA 285 36.99 c.37.1.5 108666 1eyzA 392 37.00 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1mrzA 293 37.72 b.43.5.1,c.26.1.3 91452,91453 2imfA 203 38.58 2fb9A 322 38.83 2c81A 418 39.42 1m6yA 301 39.54 a.60.13.1,c.66.1.23 78716,78717 2r6r1 338 40.16 1m32A 366 40.53 c.67.1.3 78508 2o7cA 398 40.69 2p4hX 322 41.80 2blnA 305 42.33 b.46.1.1,c.65.1.1 128734,128735 1b5pA 385 42.33 c.67.1.1 90403 1ynuA 473 42.47 c.67.1.4 123762 1bs0A 384 42.62 c.67.1.4 34490 1ks9A 291 42.69 a.100.1.7,c.2.1.6 68857,68858 2zg5A 397 43.07 2c5aA 379 43.90 c.2.1.2 129894 2ordA 397 44.11 1lc5A 364 44.52 c.67.1.1 73827 2b4rO 345 44.81 c.2.1.3,d.81.1.1 127845,127846 1jq5A 370 45.07 e.22.1.2 67084 1cs1A 386 45.23 c.67.1.3 34399 1ni5A 433 45.25 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2byjA 439 46.09 c.67.1.4 129483 2g17A 337 46.62 c.2.1.3,d.81.1.1 134512,134513 1irxA 523 47.07 a.97.1.2,c.26.1.1 71378,71379 2aefA 234 48.02 1ur5A 309 48.65 c.2.1.5,d.162.1.1 99807,99808 1y8qA 346 49.30 1rv3A 483 50.20 c.67.1.4 105101 2q49A 359 50.22 c.2.1.3,d.81.1.1 139831,139832 1kq3A 376 51.23 e.22.1.2 68790 1c7nA 399 51.30 c.67.1.3 34413 1db3A 372 52.33 c.2.1.2 29813 2ewdA 317 54.57 1wyuA 438 55.27 c.67.1.7 121452 1b7gO 340 57.46 c.2.1.3,d.81.1.1 29992,39907 2z1yA 397 57.53 1njrA 284 57.89 c.50.1.2 103858 1w7lA 422 58.86 c.67.1.1 109226 2yrxA 451 59.24 1efdN 266 59.95 c.92.2.1 35597 2nqtA 352 60.32 2ozpA 345 61.08 2yrrA 353 62.38 1psdA 409 62.42 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2e7jA 371 62.84 2pn1A 331 63.17 2a84A 300 64.45 c.26.1.4 126389 2f7lA 455 64.46 1d2fA 390 65.83 c.67.1.3 34411 1ldg 316 66.57 1brmA 367 66.82 c.2.1.3,d.81.1.1 30030,39945 1oi2A 366 67.06 c.119.1.2 103802 1y4iA 398 67.17 c.67.1.3 122619 1ydnA 295 67.58 1a04A 215 67.77 a.4.6.2,c.23.1.1 16234,31089 1jx4A 352 68.03 d.240.1.1,e.8.1.7 90378,90379 1oj7A 408 69.12 e.22.1.2 103971 2pzmA 330 70.11 1cf2O 337 70.12 c.2.1.3,d.81.1.1 29994,39909 2r00A 336 70.31 1v72A 356 71.15 c.67.1.1 119860 1bw0A 416 71.33 c.67.1.1 34385 1mw9X 592 71.55 e.10.1.1 91480 2o5cA 659 71.58 1w25A 459 71.67 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2po3A 424 71.74 2viaA 405 72.08 2g5cA 281 72.18 a.100.1.12,c.2.1.6 134646,134647 2ew2A 316 75.32 2cunA 410 75.35 2dkb 433 75.37 1k3tA 359 75.86 c.2.1.3,d.81.1.1 72022,72023 1iugA 352 76.41 c.67.1.3 90699 1oatA 439 76.52 c.67.1.4 34461 1zd1A 284 76.79 1k0fA 277 77.24 c.92.2.2 71974 3caiA 406 77.30 1h7eA 245 77.52 c.68.1.13 60717 2cvzA 289 77.63 a.100.1.1,c.2.1.6 130890,130891 2r79A 283 77.73 1t2dA 322 78.62 c.2.1.5,d.162.1.1 99084,99085 1bxkA 355 80.24 c.2.1.2 29803 1sxjA 511 80.49 a.80.1.1,c.37.1.20 106081,106082 1y8qB 640 80.60 1dv1A 449 81.34 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1bdmA 327 81.53 c.2.1.5,d.162.1.1 30137,42104 2gt1A 326 81.63 2i6tA 303 82.12 1ofuA 320 82.16 c.32.1.1,d.79.2.1 86972,86973 2douA 376 85.64 1bg6A 359 87.12 a.100.1.5,c.2.1.6 18810,30214 2v6gA 364 87.17 2basA 431 87.23 c.1.33.1,d.110.6.2 128244,128245 1pgjA 478 88.20 a.100.1.1,c.2.1.6 18783,30195 2czcA 334 88.24 d.81.1.1 131044 1wdeA 294 88.46 c.90.1.1 114534 2r2nA 425 88.68 1r6dA 337 88.97 c.2.1.2 97148 2zcuA 286 89.08 1a76 326 89.32 1kl1A 419 89.40 c.67.1.4 72663