# List of top-scoring protein chains for T0454.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pb6A 212 1.33e-17 a.4.1.9,a.121.1.1 88017,88018 1vi0A 206 1.41e-17 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 8.24e-17 3cdlA 203 1.37e-16 3bruA 222 3.49e-16 2uxuA 210 9.31e-16 2hytA 197 2.67e-15 2ibdA 204 3.19e-15 2i10A 202 1.13e-14 a.4.1.9,a.121.1.1 136960,136961 2g7sA 194 1.19e-14 a.4.1.9,a.121.1.1 134737,134738 2iaiA 230 1.53e-14 2f07A 197 1.61e-14 1zkgA 212 1.74e-14 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 1.75e-14 2iekA 200 1.78e-14 3bhqA 211 2.18e-14 2g3bA 208 2.82e-14 a.4.1.9,a.121.1.1 134558,134559 2genA 197 3.55e-14 a.4.1.9,a.121.1.1 135062,135063 2eh3A 179 6.27e-14 1rktA 205 6.36e-14 a.4.1.9,a.121.1.1 97623,97624 1ui5A 215 1.00e-13 a.4.1.9,a.121.1.1 107856,107857 2fx0A 201 1.06e-13 a.4.1.9,a.121.1.1 134269,134270 3c07A 273 1.10e-13 2pbxA 203 1.41e-13 2gfnA 209 1.67e-13 a.4.1.9,a.121.1.1 135101,135102 2d6yA 202 1.99e-13 a.4.1.9,a.121.1.1 131313,131314 3crjA 199 2.54e-13 2jj7A 186 3.04e-13 2qibA 231 5.20e-13 1jt6A 188 6.36e-13 a.4.1.9,a.121.1.1 67247,67248 1rkwA 194 6.65e-13 a.4.1.9,a.121.1.1 104967,104968 1qvtA 194 7.47e-13 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 7.57e-13 2nx4A 194 7.61e-13 1sgmA 191 7.81e-13 a.4.1.9,a.121.1.1 105537,105538 2qcoA 210 8.06e-13 2fbqA 235 1.08e-12 a.4.1.9,a.121.1.1 133256,133257 2qtqA 213 4.04e-12 2qwtA 196 4.41e-12 2zcmA 192 5.38e-12 1u9nA 236 6.60e-12 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 6.63e-12 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 7.11e-12 2q24A 194 7.44e-12 2zcnA 192 8.46e-12 2raeA 207 2.50e-11 2np3A 212 5.29e-11 a.4.1.9,a.121.1.1 138420,138421 2pz9A 226 6.68e-11 2fd5A 180 8.42e-11 a.4.1.9,a.121.1.1 133291,133292 3cjdA 198 1.00e-10 2fq4A 192 1.00e-10 a.4.1.9,a.121.1.1 133937,133938 2np5A 203 1.33e-10 a.4.1.9,a.121.1.1 138424,138425 2of7A 260 1.59e-10 2guhA 214 2.32e-10 3b81A 203 2.43e-10 2rekA 199 2.63e-10 2rasA 212 3.44e-10 3c2bA 221 5.35e-10 3bjbA 207 6.03e-10 2dg8A 193 6.20e-10 3bniA 229 1.34e-09 3cwrA 208 1.76e-09 2zb9A 214 1.80e-09 1t33A 224 2.79e-09 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 4.15e-09 3colA 196 4.82e-09 2id3A 225 5.43e-09 a.4.1.9,a.121.1.1 137261,137262 1v7bA 185 6.37e-09 a.4.1.9,a.121.1.1 119861,119862 2dh0A 183 6.38e-09 2yvhA 177 6.39e-09 2yveA 185 6.40e-09 2hkuA 215 1.53e-08 2oi8A 216 1.59e-08 2ns7A 208 4.96e-08 2dg7A 195 5.83e-08 2o7oA 207 6.79e-08 a.4.1.9,a.121.1.1 138930,138931 1zk8A 183 6.96e-08 a.4.1.9,a.121.1.1 125177,125178 2tctA 207 7.05e-08 a.4.1.9,a.121.1.1 16063,19240 2trtA 217 7.32e-08 a.4.1.9,a.121.1.1 16064,19241 1qpiA 203 7.83e-08 a.4.1.9,a.121.1.1 16072,19249 2hxiA 241 1.04e-07 3bqyA 209 2.39e-07 2vprA 207 2.78e-07 1a6iA 217 3.05e-07 a.4.1.9,a.121.1.1 16066,19243 2qkoA 215 3.55e-07 1z0xA 220 5.97e-07 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 1.37e-06 2o7tA 199 4.95e-06 2g7lA 243 1.20e-05 a.4.1.9,a.121.1.1 134734,134735 2g7gA 213 7.86e-05 a.4.1.9,a.121.1.1 134732,134733 2optA 234 0.000137 2iu5A 195 0.000517 2e85A 159 0.3149 2i8lA 156 0.3197 2pg4A 95 5.571 1du6A 64 10.27 a.4.1.1 16002 1kftA 78 11.02 a.60.2.3 77375 1pruA 56 11.27 a.35.1.5 17104 1pufB 73 11.28 a.4.1.1 95132 1b72B 87 11.55 a.4.1.1 16001 1pveA 72 15.11 a.189.1.1 104322 1b8iB 63 16.18 a.4.1.1 16011 1mhyD 521 19.13 a.25.1.2 16780 1lfuP 82 21.00 a.4.1.1 77939 2douA 376 22.93 1uxcA 65 24.80 a.35.1.5 17119 2q15A 385 28.02 2vijA 392 28.07 2q11A 388 28.13 1nylA 539 29.05 b.53.1.2,c.26.1.1 80741,80742 1qruA 553 29.23 b.53.1.2,c.26.1.1 26946,31585 1qrtA 553 29.60 b.53.1.2,c.26.1.1 26943,31582 1euyA 548 29.65 b.53.1.2,c.26.1.1 26945,31584 1qtqA 553 29.76 b.53.1.2,c.26.1.1 26940,31579 1o0cA 554 29.81 b.53.1.2,c.26.1.1 86529,86530 1qrsA 553 29.86 b.53.1.2,c.26.1.1 26941,31580 2rd2A 556 30.32 2fdpA 388 34.21 b.50.1.2 133316 2g94A 389 34.26 b.50.1.2 134790 1fknA 391 34.31 b.50.1.2 26879 2qp8A 395 34.39 2iqgA 406 34.43 b.50.1.2 137588 3buhA 409 35.02 2ohqA 402 35.39 b.50.1.2 139075 1ym2A 402 35.54 b.50.1.2 123679 2zhvA 411 35.57 1ym4A 408 35.58 b.50.1.2 123682 3ckpA 412 35.66 1w50A 411 35.68 b.50.1.2 109173 2ph8A 405 35.75 2qzlA 411 36.99 3fruA 269 38.60 b.1.1.2,d.19.1.1 20657,38150 1s7oA 113 40.46 a.4.13.3 105354 1j4zA 547 44.12 a.129.1.1,c.8.5.1,d.56.1.1 90838,90839,90840 2bjcA 62 44.28 a.35.1.5 128620 1svtA 524 44.62 1ss8A 524 44.65 1sx3A 525 44.73 1kp8A 547 44.78 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2eu1A 548 45.40 1xckA 547 46.67 1gr5A 547 46.71 i.16.1.1 65478 1gwcA 230 48.32 a.45.1.1,c.47.1.5 70660,70661 3bj6A 152 53.09 2o5hA 136 53.71 2va7A 455 59.31 1dk7A 146 61.20 c.8.5.1 30772 1hlvA 131 61.44 a.4.1.7,a.4.1.7 65854,65855 2p83A 455 61.70 b.50.1.2 139519 2qsjA 154 61.93 3ctpA 330 63.05 1jonA 155 65.64 c.8.5.1 30780 2jn6A 97 66.62 2r6gF 514 68.93 1htbA 374 70.08 b.35.1.2,c.2.1.1 24715,29731 1u3uA 374 70.61 b.35.1.2,c.2.1.1 113005,113006 1hdyA 374 70.84 b.35.1.2,c.2.1.1 24723,29739 1hdzA 374 71.15 b.35.1.2,c.2.1.1 24725,29741 1c7dA 284 71.67 a.1.1.2,a.1.1.2 15278,15279 3b7hA 78 71.77 1ae7A 119 73.25 a.133.1.2 19553 1lccA 51 74.55 a.35.1.5 17110 1grlA 548 75.46 a.129.1.1,c.8.5.1,d.56.1.1 19487,30816,38935 1oelA 547 77.69 a.129.1.1,c.8.5.1,d.56.1.1 19452,30781,38900 1fqfA 331 77.73 c.94.1.2 59989