# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.55e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 6.15e-22 2id6A 202 8.86e-22 1rktA 205 1.17e-21 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 1.46e-21 1zkgA 212 1.90e-21 a.4.1.9,a.121.1.1 125194,125195 3cwrA 208 1.95e-21 2f07A 197 1.98e-21 2uxuA 210 2.29e-21 3bruA 222 2.72e-21 2ibdA 204 3.21e-21 2g7sA 194 3.86e-21 a.4.1.9,a.121.1.1 134737,134738 3bcgA 215 3.98e-21 1pb6A 212 3.99e-21 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 4.82e-21 a.4.1.9,a.121.1.1 124588,124589 2rasA 212 5.29e-21 2hyjA 200 5.44e-21 2iekA 200 5.63e-21 3ccyA 203 6.46e-21 1t56A 216 1.03e-20 a.4.1.9,a.121.1.1 106428,106429 3crjA 199 1.04e-20 2qcoA 210 1.17e-20 2g3bA 208 1.39e-20 a.4.1.9,a.121.1.1 134558,134559 2i10A 202 1.72e-20 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 1.88e-20 a.4.1.9,a.121.1.1 134269,134270 2fq4A 192 2.04e-20 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 2.24e-20 1qvtA 194 2.74e-20 a.4.1.9,a.121.1.1 104602,104603 2jj7A 186 2.97e-20 2genA 197 3.00e-20 a.4.1.9,a.121.1.1 135062,135063 2iaiA 230 4.16e-20 2dg7A 195 4.71e-20 2hytA 197 4.99e-20 1jt6A 188 5.87e-20 a.4.1.9,a.121.1.1 67247,67248 2zb9A 214 9.47e-20 2raeA 207 1.08e-19 2nx4A 194 1.26e-19 1ui5A 215 1.28e-19 a.4.1.9,a.121.1.1 107856,107857 2of7A 260 1.35e-19 2fbqA 235 1.55e-19 a.4.1.9,a.121.1.1 133256,133257 3cdlA 203 1.97e-19 3b81A 203 2.43e-19 3c2bA 221 2.76e-19 3colA 196 4.77e-19 2o7tA 199 5.57e-19 2np5A 203 5.88e-19 a.4.1.9,a.121.1.1 138424,138425 2hkuA 215 7.08e-19 2dg8A 193 9.28e-19 2yveA 185 9.90e-19 2q24A 194 1.20e-18 2qibA 231 1.21e-18 3cjdA 198 1.50e-18 2eh3A 179 1.53e-18 2iu5A 195 2.96e-18 2o7oA 207 2.99e-18 a.4.1.9,a.121.1.1 138930,138931 1sgmA 191 3.26e-18 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 4.89e-18 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 5.00e-18 a.4.1.9,a.121.1.1 119861,119862 3bqyA 209 6.31e-18 3bjbA 207 7.29e-18 2rekA 199 7.70e-18 2guhA 214 7.84e-18 3bniA 229 1.35e-17 2fd5A 180 1.36e-17 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 1.59e-17 2qwtA 196 1.71e-17 1t33A 224 1.87e-17 a.4.1.9,a.121.1.1 106295,106296 1a6i 217 2.35e-17 1zk8A 183 4.04e-17 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 7.26e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 8.58e-17 2qkoA 215 3.47e-16 1z0xA 220 3.74e-16 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 4.13e-16 2g7lA 243 3.13e-15 a.4.1.9,a.121.1.1 134734,134735 2oerA 214 4.35e-15 2optA 234 6.95e-15 2tct 207 7.03e-15 2hxoA 237 1.25e-14 2id3A 225 3.65e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 3.73e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 1.138 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.270 a.4.5.38,c.2.1.12 131708,131709 1c0wA 225 1.463 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2jn6A 97 1.855 2oxoA 103 1.955 1on2A 142 2.174 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 2.333 2bnmA 198 2.770 a.35.1.3,b.82.1.10 128835,128836 6paxA 133 2.908 a.4.1.5,a.4.1.5 64758,64759 1lccA 51 3.273 a.35.1.5 17110 1hlvA 131 3.562 a.4.1.7,a.4.1.7 65854,65855 2pjpA 121 3.728 1xcbA 211 3.780 a.4.5.38,c.2.1.12 109552,109553 3bbyA 215 4.098 2bjcA 62 4.726 a.35.1.5 128620 2qq9A 226 5.478 1bi0 226 5.850 1cjgA 62 6.023 a.35.1.5 17112 1pdnC 128 6.469 a.4.1.5 16047 1a5t 334 8.283 1gulA 222 8.809 a.45.1.1,c.47.1.5 17675,32969 1jkoC 52 9.432 a.4.1.2 66809 1gwcA 230 9.938 a.45.1.1,c.47.1.5 70660,70661 1fseA 74 11.18 a.4.6.2 60000 1w07A 659 11.52 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 3bzcA 785 12.15 1s7oA 113 12.28 a.4.13.3 105354 3b7hA 78 13.40 3bs3A 76 13.90 1hg5A 289 14.14 a.7.8.2,a.118.9.3 90360,90361 2dtrA 226 15.59 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1zljA 78 16.33 1oqyA 368 16.68 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1nhyA 219 17.18 a.45.1.1,c.47.1.5 80520,80521 1fx7A 230 17.91 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2fbkA 181 19.71 a.4.5.28 133247 1p4wA 99 20.13 a.4.6.2 87783 1f3aA 222 20.36 a.45.1.1,c.47.1.5 17701,32995 1neqA 74 21.32 a.35.1.2 17063 1b1bA 140 21.40 a.4.5.24,a.76.1.1 16215,18421 1je8A 82 22.52 a.4.6.2 77108 1k0dA 260 23.23 a.45.1.1,c.47.1.5 67930,67931 1utxA 66 24.15 a.35.1.3 108034 1wsuA 124 24.69 a.4.5.35,a.4.5.35 121245,121246 2ig3A 127 25.63 2ictA 94 26.40 1gseA 221 27.07 a.45.1.1,c.47.1.5 17667,32961 1u8bA 133 27.87 1wpkA 146 30.05 2hpkA 208 30.10 1k3yA 221 30.79 a.45.1.1,c.47.1.5 77245,77246 1m0uA 249 31.11 a.45.1.1,c.47.1.5 78359,78360 1vz0A 230 31.19 a.4.14.1,d.268.1.1 108929,108930 2cro 71 33.52 1f5tA 121 33.86 a.4.5.24,a.76.1.1 16203,18409 2croA 71 34.42 a.35.1.2 17038 1tadA 324 34.61 a.66.1.1,c.37.1.8 18194,32077 1ret 43 35.38 1vf1A 229 36.98 1r69A 69 40.74 a.35.1.2 17028 1a0eA 443 41.32 c.1.15.3 29537 1hcrA 52 41.44 a.4.1.2 16020 2zcwA 202 41.50 3c6gA 479 41.56 2de3A 365 42.23 1vfsA 386 43.57 b.49.2.2,c.1.6.1 108584,108585 1rzsA 61 43.57 a.35.1.2 105139 2cdnA 201 45.53 c.37.1.1 130289 1y0uA 96 46.07 a.4.5.5 116310 3bct 457 46.76 1yn9A 169 47.33 1xsvA 113 47.45 a.4.13.3 116003 1y9qA 192 49.80 a.35.1.8,b.82.1.15 116592,116593 2r1jL 68 50.06 2auwA 170 50.49 a.35.1.10,d.331.1.1 127339,127340 2ebyA 113 51.42 2dtr 226 52.27 1b0nA 111 53.82 a.34.1.1,a.35.1.3 17001,17064 2cohA 202 54.46 a.4.5.4,b.82.3.2 130677,130678 1ho8A 480 55.46 a.118.1.9 61107 2scpA 174 56.27 a.39.1.5 17256 1adrA 76 56.83 a.35.1.2 17042 2ivmA 150 59.97 1jj2U 70 61.58 a.2.2.1 63106 1j5yA 187 62.44 a.4.5.1,d.94.2.1 71592,71593 1sedA 117 63.02 a.219.1.1 105449 1efaA 333 63.11 a.35.1.5,c.93.1.1 17106,35691 1sfxA 109 63.16 a.4.5.50 105505 2gsqA 202 63.37 a.45.1.1,c.47.1.5 17715,33009 2o3fA 111 63.60 2gauA 232 65.05 a.4.5.4,b.82.3.2 134894,134895 1qpzA 340 66.00 a.35.1.5,c.93.1.1 17097,35673 1wdvA 152 66.02 d.116.1.1 114539 1iyhA 198 67.91 a.45.1.1,c.47.1.5 83790,83791 1r03A 182 69.89 a.25.1.1 104675 2eiyA 308 70.76 1g6wA 261 70.79 a.45.1.1,c.47.1.5 17751,33045 1ehiA 377 73.68 c.30.1.2,d.142.1.1 31716,41484 3cecA 104 74.11 1resA 43 74.84 a.4.1.2 16023 1oyiA 82 75.52 a.4.5.19 93729 1g73A 162 76.83 a.7.4.1 16332 2qsfX 171 76.88 1dm1A 146 76.94 a.1.1.2 15153 1mc3A 296 78.68 c.68.1.6 78943 2a9dA 372 79.38 b.1.18.6,d.176.1.1 126431,126432 2q7eA 291 79.52 2h09A 155 80.22 2h27A 73 80.26 a.4.13.2 135993 2gxgA 146 80.35 1vpwA 340 82.51 a.35.1.5,c.93.1.1 17087,35680 2b5aA 77 82.66 a.35.1.3 127882 2fjrA 189 84.74 1b48A 221 84.97 a.45.1.1,c.47.1.5 17703,32997 1oe8A 211 85.47 a.45.1.1,c.47.1.5 86905,86906 1y7yA 74 86.25 a.35.1.3 122729 1r69 69 86.57 2a8lA 420 87.37 1rp3A 239 88.54 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1r1uA 106 89.16 a.4.5.5 104771 2q7wA 396 89.74 1eyyA 510 89.93 c.82.1.1 35389