# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.82e-20 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 1.87e-20 2id6A 202 3.12e-20 2pbxA 203 4.54e-20 1zkgA 212 4.82e-20 a.4.1.9,a.121.1.1 125194,125195 2f07A 197 4.86e-20 1rktA 205 4.96e-20 a.4.1.9,a.121.1.1 97623,97624 3cwrA 208 6.71e-20 2uxuA 210 6.95e-20 3bruA 222 8.37e-20 2ibdA 204 1.17e-19 2g7sA 194 1.20e-19 a.4.1.9,a.121.1.1 134737,134738 3bcgA 215 1.20e-19 1pb6A 212 1.23e-19 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 1.34e-19 a.4.1.9,a.121.1.1 124588,124589 2hyjA 200 1.41e-19 2rasA 212 1.87e-19 2iekA 200 1.98e-19 3crjA 199 2.22e-19 3ccyA 203 2.64e-19 2qcoA 210 2.75e-19 1t56A 216 3.71e-19 a.4.1.9,a.121.1.1 106428,106429 2i10A 202 3.86e-19 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 4.36e-19 a.4.1.9,a.121.1.1 134558,134559 2fq4A 192 6.05e-19 a.4.1.9,a.121.1.1 133937,133938 2fx0A 201 6.65e-19 a.4.1.9,a.121.1.1 134269,134270 1qvtA 194 7.30e-19 a.4.1.9,a.121.1.1 104602,104603 3cjdA 198 9.11e-19 2genA 197 9.34e-19 a.4.1.9,a.121.1.1 135062,135063 2dg7A 195 1.00e-18 2iaiA 230 1.14e-18 2qtqA 213 1.24e-18 1jt6A 188 1.27e-18 a.4.1.9,a.121.1.1 67247,67248 2jj7A 186 1.53e-18 2hytA 197 1.58e-18 3cdlA 203 1.94e-18 2nx4A 194 1.99e-18 2of7A 260 2.63e-18 2zb9A 214 2.64e-18 2fbqA 235 3.00e-18 a.4.1.9,a.121.1.1 133256,133257 2raeA 207 3.41e-18 1ui5A 215 4.30e-18 a.4.1.9,a.121.1.1 107856,107857 3b81A 203 5.15e-18 3c2bA 221 5.19e-18 2yveA 185 9.12e-18 2dg8A 193 1.22e-17 2np5A 203 1.38e-17 a.4.1.9,a.121.1.1 138424,138425 2eh3A 179 1.43e-17 3colA 196 1.44e-17 2hkuA 215 1.58e-17 2o7tA 199 2.77e-17 2q24A 194 2.96e-17 2qibA 231 3.35e-17 1sgmA 191 3.51e-17 a.4.1.9,a.121.1.1 105537,105538 2o7oA 207 3.88e-17 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 4.19e-17 3bqyA 209 6.55e-17 1v7bA 185 7.20e-17 a.4.1.9,a.121.1.1 119861,119862 3bjbA 207 7.92e-17 2guhA 214 8.01e-17 2d6yA 202 1.08e-16 a.4.1.9,a.121.1.1 131313,131314 1a6i 217 1.72e-16 2fd5A 180 1.76e-16 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 2.20e-16 1t33A 224 2.39e-16 a.4.1.9,a.121.1.1 106295,106296 3bniA 229 2.61e-16 2rekA 199 2.72e-16 1zk8A 183 3.88e-16 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 4.78e-16 2oi8A 216 1.18e-15 2gfnA 209 1.41e-15 a.4.1.9,a.121.1.1 135101,135102 2qkoA 215 1.77e-15 2zcmA 192 3.47e-15 1z0xA 220 5.18e-15 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 2.13e-14 2g7lA 243 2.31e-14 a.4.1.9,a.121.1.1 134734,134735 2tct 207 4.79e-14 2optA 234 8.43e-14 2hxoA 237 1.03e-13 2id3A 225 3.83e-13 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 2.59e-10 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 1.461 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.691 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1on2A 142 2.410 a.4.5.24,a.76.1.1 87103,87104 2dt5A 211 2.682 a.4.5.38,c.2.1.12 131708,131709 2oxoA 103 3.132 2jn6A 97 3.224 2pg4A 95 3.951 1w07A 659 4.377 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1pdnC 128 4.697 a.4.1.5 16047 2bnmA 198 5.204 a.35.1.3,b.82.1.10 128835,128836 1xcbA 211 5.208 a.4.5.38,c.2.1.12 109552,109553 1f3aA 222 7.185 a.45.1.1,c.47.1.5 17701,32995 1lccA 51 7.695 a.35.1.5 17110 2qq9A 226 8.179 6paxA 133 8.186 a.4.1.5,a.4.1.5 64758,64759 2pjpA 121 8.429 1ho8A 480 8.590 a.118.1.9 61107 1gwcA 230 8.618 a.45.1.1,c.47.1.5 70660,70661 3bzcA 785 8.896 1hlvA 131 9.161 a.4.1.7,a.4.1.7 65854,65855 3bbyA 215 9.550 2bjcA 62 9.816 a.35.1.5 128620 1nhyA 219 10.34 a.45.1.1,c.47.1.5 80520,80521 1jkoC 52 10.98 a.4.1.2 66809 1a5t 334 11.07 1gulA 222 11.24 a.45.1.1,c.47.1.5 17675,32969 1bi0 226 11.41 1cjgA 62 11.79 a.35.1.5 17112 1tadA 324 12.21 a.66.1.1,c.37.1.8 18194,32077 1b1bA 140 13.08 a.4.5.24,a.76.1.1 16215,18421 1oqyA 368 14.22 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2ig3A 127 14.60 1gseA 221 16.15 a.45.1.1,c.47.1.5 17667,32961 1m0uA 249 18.18 a.45.1.1,c.47.1.5 78359,78360 1k0dA 260 19.45 a.45.1.1,c.47.1.5 67930,67931 1vf1A 229 20.61 1hg5A 289 20.87 a.7.8.2,a.118.9.3 90360,90361 1fseA 74 21.23 a.4.6.2 60000 1k3yA 221 21.60 a.45.1.1,c.47.1.5 77245,77246 1zljA 78 22.67 1fx7A 230 22.70 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wpkA 146 22.95 3b7hA 78 24.98 2fbkA 181 25.48 a.4.5.28 133247 2dtrA 226 25.48 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1neqA 74 25.74 a.35.1.2 17063 3bs3A 76 29.83 1p4wA 99 30.62 a.4.6.2 87783 1yn9A 169 30.73 1je8A 82 31.03 a.4.6.2 77108 1bl0A 129 32.26 a.4.1.8,a.4.1.8 16053,16054 1s7oA 113 32.48 a.4.13.3 105354 1oe8A 211 32.64 a.45.1.1,c.47.1.5 86905,86906 2gsqA 202 34.12 a.45.1.1,c.47.1.5 17715,33009 1b48A 221 34.14 a.45.1.1,c.47.1.5 17703,32997 3c6gA 479 36.35 2hpkA 208 36.95 2cdnA 201 37.28 c.37.1.1 130289 1ret 43 38.08 1g73A 162 44.11 a.7.4.1 16332 1g6wA 261 44.96 a.45.1.1,c.47.1.5 17751,33045 3bct 457 46.13 1wsuA 124 46.52 a.4.5.35,a.4.5.35 121245,121246 1u8bA 133 46.88 1pgtA 210 47.71 a.45.1.1,c.47.1.5 17515,32809 2q7wA 396 49.31 1rzsA 61 50.43 a.35.1.2 105139 2cro 71 51.28 1s69A 124 51.93 a.1.1.1 105305 1oyiA 82 54.06 a.4.5.19 93729 1vz0A 230 54.30 a.4.14.1,d.268.1.1 108929,108930 1lea 84 54.96 2croA 71 55.14 a.35.1.2 17038 1iscA 192 55.95 a.2.11.1,d.44.1.1 15733,38726 1iyhA 198 55.97 a.45.1.1,c.47.1.5 83790,83791 1pveA 72 56.23 a.189.1.1 104322 2on5A 206 56.94 1oktA 211 58.74 a.45.1.1,c.47.1.5 93272,93273 1jj2U 70 58.85 a.2.2.1 63106 2blfA 373 58.86 1efaA 333 59.24 a.35.1.5,c.93.1.1 17106,35691 1utxA 66 59.95 a.35.1.3 108034 2scpA 174 60.37 a.39.1.5 17256 1k3kA 158 61.84 f.1.4.1 72017 1lj8A 493 62.75 a.100.1.9,c.2.1.6 90392,90393 2q7eA 291 63.07 1kxrA 339 64.76 d.3.1.3 73175 2aelA 374 66.88 2j3tD 219 68.18 1r69A 69 70.78 a.35.1.2 17028 2dtr 226 71.43 2auwA 170 71.55 a.35.1.10,d.331.1.1 127339,127340 2eiyA 308 71.88 1a0eA 443 72.46 c.1.15.3 29537 1ehiA 377 73.04 c.30.1.2,d.142.1.1 31716,41484 1rp3A 239 73.44 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1y9qA 192 75.95 a.35.1.8,b.82.1.15 116592,116593 1f5tA 121 76.41 a.4.5.24,a.76.1.1 16203,18409 1fewA 184 76.75 a.7.4.1 16334 1hcrA 52 76.97 a.4.1.2 16020 1sfxA 109 77.60 a.4.5.50 105505 2ohhA 404 77.86 2ivmA 150 78.43 1gcvA 140 78.44 a.1.1.2 15410 1hqoA 258 80.88 a.45.1.1,c.47.1.5 17749,33043 1j0tA 78 81.21 a.163.1.1 77051 2a9dA 372 84.14 b.1.18.6,d.176.1.1 126431,126432 2ictA 94 84.98 1y0uA 96 85.21 a.4.5.5 116310 2bkmA 128 86.48 2fdvA 476 87.05 1wa5B 530 89.26 a.118.1.1 114432