# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 2.84e-23 1vi0A 206 3.35e-23 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 7.79e-23 1zkgA 212 1.06e-22 a.4.1.9,a.121.1.1 125194,125195 2f07A 197 1.21e-22 2pbxA 203 1.38e-22 1rktA 205 1.61e-22 a.4.1.9,a.121.1.1 97623,97624 3cwrA 208 2.14e-22 2uxuA 210 2.53e-22 3ccyA 203 2.83e-22 2ibdA 204 3.36e-22 2g7sA 194 3.92e-22 a.4.1.9,a.121.1.1 134737,134738 3bcgA 215 4.09e-22 2hyjA 200 4.14e-22 3bruA 222 4.43e-22 2rasA 212 4.59e-22 1z77A 200 5.17e-22 a.4.1.9,a.121.1.1 124588,124589 2g3bA 208 5.66e-22 a.4.1.9,a.121.1.1 134558,134559 2qcoA 210 5.67e-22 2iekA 200 7.16e-22 1pb6A 212 9.98e-22 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 1.23e-21 1t56A 216 1.65e-21 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 1.95e-21 a.4.1.9,a.121.1.1 104602,104603 2fx0A 201 2.12e-21 a.4.1.9,a.121.1.1 134269,134270 2qtqA 213 2.52e-21 2i10A 202 2.68e-21 a.4.1.9,a.121.1.1 136960,136961 1jt6A 188 3.23e-21 a.4.1.9,a.121.1.1 67247,67248 2fq4A 192 3.64e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 4.05e-21 2jj7A 186 4.39e-21 2iaiA 230 5.87e-21 2nx4A 194 6.86e-21 2raeA 207 7.40e-21 2of7A 260 7.42e-21 2genA 197 7.58e-21 a.4.1.9,a.121.1.1 135062,135063 2hytA 197 8.45e-21 2zb9A 214 9.88e-21 1ui5A 215 1.23e-20 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 1.40e-20 3b81A 203 1.88e-20 3c2bA 221 2.53e-20 2fbqA 235 2.99e-20 a.4.1.9,a.121.1.1 133256,133257 2hkuA 215 7.12e-20 3colA 196 7.91e-20 2yveA 185 8.47e-20 2np5A 203 8.61e-20 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 1.04e-19 2o7tA 199 1.13e-19 3cjdA 198 1.26e-19 2qibA 231 1.59e-19 2q24A 194 1.77e-19 2eh3A 179 2.02e-19 2iu5A 195 2.46e-19 2o7oA 207 4.18e-19 a.4.1.9,a.121.1.1 138930,138931 1sgmA 191 4.88e-19 a.4.1.9,a.121.1.1 105537,105538 3bjbA 207 5.98e-19 2d6yA 202 6.67e-19 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 7.65e-19 a.4.1.9,a.121.1.1 119861,119862 3bniA 229 8.09e-19 2guhA 214 9.03e-19 2rekA 199 1.08e-18 3bqyA 209 1.25e-18 1a6i 217 1.85e-18 1t33A 224 2.16e-18 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 2.77e-18 2gfnA 209 3.88e-18 a.4.1.9,a.121.1.1 135101,135102 2fd5A 180 4.88e-18 a.4.1.9,a.121.1.1 133291,133292 1zk8A 183 8.87e-18 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 9.67e-18 2oi8A 216 1.54e-17 2qkoA 215 2.43e-17 1z0xA 220 3.21e-17 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 1.33e-16 2oerA 214 3.71e-16 2g7lA 243 6.06e-16 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.33e-15 2optA 234 1.78e-15 2tct 207 1.92e-15 2id3A 225 6.84e-15 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 4.39e-12 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.9607 2ev0A 142 1.026 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.263 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dt5A 211 2.857 a.4.5.38,c.2.1.12 131708,131709 3bbyA 215 2.892 1on2A 142 3.083 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 3.137 1lccA 51 3.663 a.35.1.5 17110 2jn6A 97 4.106 1gwcA 230 4.413 a.45.1.1,c.47.1.5 70660,70661 2bnmA 198 4.478 a.35.1.3,b.82.1.10 128835,128836 2bjcA 62 4.829 a.35.1.5 128620 1cjgA 62 5.747 a.35.1.5 17112 1nhyA 219 5.876 a.45.1.1,c.47.1.5 80520,80521 1a5t 334 6.354 1hlvA 131 6.395 a.4.1.7,a.4.1.7 65854,65855 1gulA 222 7.044 a.45.1.1,c.47.1.5 17675,32969 1bi0 226 7.623 2qq9A 226 7.687 1pdnC 128 9.248 a.4.1.5 16047 6paxA 133 10.35 a.4.1.5,a.4.1.5 64758,64759 1tadA 324 10.63 a.66.1.1,c.37.1.8 18194,32077 1xcbA 211 10.89 a.4.5.38,c.2.1.12 109552,109553 3bzcA 785 12.12 1fseA 74 14.45 a.4.6.2 60000 1b1bA 140 14.73 a.4.5.24,a.76.1.1 16215,18421 1wsuA 124 15.14 a.4.5.35,a.4.5.35 121245,121246 2gsqA 202 15.62 a.45.1.1,c.47.1.5 17715,33009 1f3aA 222 15.63 a.45.1.1,c.47.1.5 17701,32995 1w07A 659 15.64 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1yn9A 169 15.83 1oqyA 368 16.82 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3b7hA 78 17.03 1k0dA 260 18.05 a.45.1.1,c.47.1.5 67930,67931 1jkoC 52 18.69 a.4.1.2 66809 2o3fA 111 18.70 3bs3A 76 18.95 1neqA 74 19.41 a.35.1.2 17063 1ngkA 128 21.51 a.1.1.1 85673 1m0uA 249 21.94 a.45.1.1,c.47.1.5 78359,78360 1hg5A 289 22.41 a.7.8.2,a.118.9.3 90360,90361 2fmyA 220 22.66 1gseA 221 24.37 a.45.1.1,c.47.1.5 17667,32961 1zljA 78 27.15 1p4wA 99 27.30 a.4.6.2 87783 2bkmA 128 27.36 1ft9A 222 27.53 a.4.5.4,b.82.3.1 16107,28131 2pjpA 121 29.05 1ho8A 480 29.11 a.118.1.9 61107 1r03A 182 30.29 a.25.1.1 104675 2aelA 374 31.28 1s69A 124 31.64 a.1.1.1 105305 2on5A 206 31.73 1alvA 173 32.00 a.39.1.8 17370 1oe8A 211 32.41 a.45.1.1,c.47.1.5 86905,86906 2ve3A 444 33.13 2zcwA 202 34.12 1s7oA 113 35.20 a.4.13.3 105354 1utxA 66 35.28 a.35.1.3 108034 2fbkA 181 38.44 a.4.5.28 133247 1k3yA 221 38.94 a.45.1.1,c.47.1.5 77245,77246 2vd8A 391 41.20 2q88A 257 41.25 1g6wA 261 41.73 a.45.1.1,c.47.1.5 17751,33045 2ictA 94 41.92 2oa6A 320 42.06 1pveA 72 42.45 a.189.1.1 104322 2gauA 232 44.40 a.4.5.4,b.82.3.2 134894,134895 2q7wA 396 44.97 2hpkA 208 45.02 1v2aA 210 45.66 a.45.1.1,c.47.1.5 100263,100264 1fx7A 230 47.80 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1dm1A 146 47.82 a.1.1.2 15153 1l7vA 326 48.91 f.22.1.1 73672 2gkmA 136 49.09 2dtrA 226 49.29 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2fdvA 476 49.31 1vz0A 230 49.93 a.4.14.1,d.268.1.1 108929,108930 3bofA 566 49.96 1f5tA 121 52.04 a.4.5.24,a.76.1.1 16203,18409 2h27A 73 52.36 a.4.13.2 135993 2cohA 202 52.89 a.4.5.4,b.82.3.2 130677,130678 1aw9A 216 53.26 a.45.1.1,c.47.1.5 17736,33030 1hqoA 258 54.36 a.45.1.1,c.47.1.5 17749,33043 1je8A 82 54.51 a.4.6.2 77108 2b2hA 399 54.72 1k2xA 177 55.91 d.153.1.5 90929 2cro 71 56.39 2auwA 170 57.61 a.35.1.10,d.331.1.1 127339,127340 1rzsA 61 57.71 a.35.1.2 105139 3d0cA 314 58.09 1zr5A 214 58.22 c.50.1.2 125525 1gcvA 140 58.28 a.1.1.2 15410 1vfsA 386 58.99 b.49.2.2,c.1.6.1 108584,108585 2e60A 101 60.41 3c6gA 479 60.85 1h2eA 207 62.55 c.60.1.1 70857 2croA 71 63.13 a.35.1.2 17038 1a0eA 443 63.32 c.1.15.3 29537 1ret 43 63.81 2h6bA 250 64.18 3c8yA 574 66.69 1u8bA 133 67.62 2scpA 174 68.48 a.39.1.5 17256 2a9dA 372 69.32 b.1.18.6,d.176.1.1 126431,126432 1wdvA 152 70.12 d.116.1.1 114539 2is9A 204 70.77 1r69A 69 71.81 a.35.1.2 17028 1ea2A 131 73.27 d.17.4.3 64860 1b0nA 111 76.13 a.34.1.1,a.35.1.3 17001,17064 1qpzA 340 76.38 a.35.1.5,c.93.1.1 17097,35673 1iqpA 327 76.83 a.80.1.1,c.37.1.20 62649,62650 1w0bA 102 78.03 a.7.11.1 108985 1g73A 162 78.67 a.7.4.1 16332 1bl0A 129 78.80 a.4.1.8,a.4.1.8 16053,16054 1vf1A 229 79.15 1wpkA 146 79.38 1rp3A 239 79.42 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2ohhA 404 80.64 1j5yA 187 81.87 a.4.5.1,d.94.2.1 71592,71593 2dtr 226 83.24 1hcrA 52 83.72 a.4.1.2 16020 1nfp 228 85.31 2jfkA 433 86.01 2blfA 373 87.34 2vl6A 268 87.61 1ebbA 202 88.29 c.60.1.1 64900 1zcjA 463 89.60