# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 6.64e-23 1vi0A 206 8.34e-23 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 1.66e-22 2f07A 197 2.02e-22 1zkgA 212 2.10e-22 a.4.1.9,a.121.1.1 125194,125195 2pbxA 203 2.34e-22 1rktA 205 4.47e-22 a.4.1.9,a.121.1.1 97623,97624 3cwrA 208 4.71e-22 2rasA 212 5.40e-22 2uxuA 210 5.42e-22 3ccyA 203 6.90e-22 2hyjA 200 7.19e-22 3bcgA 215 7.60e-22 2ibdA 204 8.11e-22 3bruA 222 8.18e-22 2g7sA 194 8.72e-22 a.4.1.9,a.121.1.1 134737,134738 2g3bA 208 1.02e-21 a.4.1.9,a.121.1.1 134558,134559 1z77A 200 1.07e-21 a.4.1.9,a.121.1.1 124588,124589 2qcoA 210 1.26e-21 1pb6A 212 1.41e-21 a.4.1.9,a.121.1.1 88017,88018 2iekA 200 1.61e-21 3crjA 199 2.55e-21 1t56A 216 3.49e-21 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 3.83e-21 a.4.1.9,a.121.1.1 104602,104603 2fx0A 201 4.02e-21 a.4.1.9,a.121.1.1 134269,134270 2i10A 202 5.25e-21 a.4.1.9,a.121.1.1 136960,136961 2fq4A 192 7.03e-21 a.4.1.9,a.121.1.1 133937,133938 1jt6A 188 7.14e-21 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 7.86e-21 2dg7A 195 8.05e-21 2jj7A 186 9.93e-21 2iaiA 230 1.06e-20 2raeA 207 1.21e-20 2of7A 260 1.30e-20 2nx4A 194 1.41e-20 2genA 197 1.50e-20 a.4.1.9,a.121.1.1 135062,135063 1ui5A 215 1.63e-20 a.4.1.9,a.121.1.1 107856,107857 2hytA 197 2.14e-20 2zb9A 214 2.28e-20 3cdlA 203 2.33e-20 3b81A 203 3.66e-20 2fbqA 235 4.68e-20 a.4.1.9,a.121.1.1 133256,133257 3c2bA 221 6.37e-20 2dg8A 193 9.39e-20 2np5A 203 1.41e-19 a.4.1.9,a.121.1.1 138424,138425 2hkuA 215 1.52e-19 2yveA 185 1.56e-19 3colA 196 1.63e-19 3cjdA 198 1.93e-19 2o7tA 199 2.00e-19 2qibA 231 2.89e-19 2eh3A 179 2.90e-19 2q24A 194 3.13e-19 2iu5A 195 4.66e-19 2o7oA 207 5.20e-19 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 7.67e-19 1sgmA 191 8.03e-19 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.17e-18 a.4.1.9,a.121.1.1 131313,131314 3bjbA 207 1.22e-18 3bqyA 209 1.48e-18 1v7bA 185 1.49e-18 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 1.53e-18 2rekA 199 1.70e-18 1a6i 217 2.10e-18 2vprA 207 3.86e-18 1t33A 224 3.92e-18 a.4.1.9,a.121.1.1 106295,106296 2fd5A 180 5.02e-18 a.4.1.9,a.121.1.1 133291,133292 1zk8A 183 1.06e-17 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 1.21e-17 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 2.36e-17 2oi8A 216 2.52e-17 2qkoA 215 2.85e-17 1z0xA 220 6.22e-17 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 2.05e-16 2oerA 214 5.99e-16 2g7lA 243 1.02e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 2.41e-15 2optA 234 2.60e-15 2tct 207 4.21e-15 2id3A 225 1.03e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 8.46e-12 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.6506 2ev0A 142 0.9769 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.576 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1on2A 142 2.318 a.4.5.24,a.76.1.1 87103,87104 2dt5A 211 2.642 a.4.5.38,c.2.1.12 131708,131709 1gwcA 230 3.224 a.45.1.1,c.47.1.5 70660,70661 1lccA 51 4.136 a.35.1.5 17110 3bbyA 215 4.273 2pg4A 95 4.720 2jn6A 97 4.723 2bjcA 62 4.892 a.35.1.5 128620 2bnmA 198 5.093 a.35.1.3,b.82.1.10 128835,128836 6paxA 133 5.435 a.4.1.5,a.4.1.5 64758,64759 1gulA 222 5.455 a.45.1.1,c.47.1.5 17675,32969 1a5t 334 6.053 1cjgA 62 6.461 a.35.1.5 17112 1hlvA 131 6.497 a.4.1.7,a.4.1.7 65854,65855 1bi0 226 7.827 1pdnC 128 9.007 a.4.1.5 16047 1xcbA 211 9.574 a.4.5.38,c.2.1.12 109552,109553 2qq9A 226 9.603 3bzcA 785 11.69 1tadA 324 12.93 a.66.1.1,c.37.1.8 18194,32077 1nhyA 219 13.25 a.45.1.1,c.47.1.5 80520,80521 1yn9A 169 13.62 1wsuA 124 13.77 a.4.5.35,a.4.5.35 121245,121246 1fseA 74 14.92 a.4.6.2 60000 1f3aA 222 15.64 a.45.1.1,c.47.1.5 17701,32995 2pjpA 121 16.70 1oqyA 368 16.81 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1hg5A 289 18.18 a.7.8.2,a.118.9.3 90360,90361 2gsqA 202 18.33 a.45.1.1,c.47.1.5 17715,33009 3b7hA 78 18.55 3bs3A 76 18.62 1b1bA 140 20.79 a.4.5.24,a.76.1.1 16215,18421 1m0uA 249 21.08 a.45.1.1,c.47.1.5 78359,78360 2aelA 374 21.74 1w07A 659 22.13 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1ngkA 128 22.69 a.1.1.1 85673 2o3fA 111 22.94 2bkmA 128 23.90 1jkoC 52 24.02 a.4.1.2 66809 1k0dA 260 24.03 a.45.1.1,c.47.1.5 67930,67931 1ho8A 480 24.31 a.118.1.9 61107 1gseA 221 24.40 a.45.1.1,c.47.1.5 17667,32961 1neqA 74 24.46 a.35.1.2 17063 2fmyA 220 28.83 1ft9A 222 30.21 a.4.5.4,b.82.3.1 16107,28131 1p4wA 99 30.24 a.4.6.2 87783 1alvA 173 31.63 a.39.1.8 17370 1utxA 66 33.04 a.35.1.3 108034 1k3yA 221 34.21 a.45.1.1,c.47.1.5 77245,77246 1s7oA 113 34.49 a.4.13.3 105354 1zljA 78 34.81 2ve3A 444 35.24 1s69A 124 35.77 a.1.1.1 105305 2ictA 94 36.28 1oe8A 211 36.48 a.45.1.1,c.47.1.5 86905,86906 2on5A 206 39.70 1r03A 182 39.80 a.25.1.1 104675 2dtrA 226 39.91 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3c6gA 479 39.99 2gkmA 136 40.92 1u8bA 133 41.05 2zcwA 202 42.05 1f5tA 121 43.11 a.4.5.24,a.76.1.1 16203,18409 2vd8A 391 43.23 2q7wA 396 43.72 3bofA 566 44.87 1nfp 228 46.48 2auwA 170 47.76 a.35.1.10,d.331.1.1 127339,127340 1dm1A 146 48.22 a.1.1.2 15153 2hpkA 208 48.84 1v2aA 210 48.86 a.45.1.1,c.47.1.5 100263,100264 1g6wA 261 49.25 a.45.1.1,c.47.1.5 17751,33045 2fdvA 476 50.40 1fx7A 230 50.63 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1zr5A 214 51.34 c.50.1.2 125525 2cro 71 52.16 1l7vA 326 53.50 f.22.1.1 73672 1a0eA 443 53.82 c.1.15.3 29537 1vz0A 230 54.05 a.4.14.1,d.268.1.1 108929,108930 1je8A 82 54.16 a.4.6.2 77108 2fbkA 181 55.62 a.4.5.28 133247 2b2hA 399 55.72 1gcvA 140 56.73 a.1.1.2 15410 1qpzA 340 56.82 a.35.1.5,c.93.1.1 17097,35673 2croA 71 58.86 a.35.1.2 17038 2gauA 232 59.31 a.4.5.4,b.82.3.2 134894,134895 2q88A 257 60.54 1aw9A 216 63.50 a.45.1.1,c.47.1.5 17736,33030 1w0bA 102 64.27 a.7.11.1 108985 1rzsA 61 64.30 a.35.1.2 105139 2e60A 101 64.54 2scpA 174 66.12 a.39.1.5 17256 1zgwA 139 66.82 1r69A 69 68.01 a.35.1.2 17028 3d0cA 314 68.09 1wdvA 152 68.31 d.116.1.1 114539 1b0nA 111 69.41 a.34.1.1,a.35.1.3 17001,17064 1pveA 72 70.25 a.189.1.1 104322 1vfsA 386 70.32 b.49.2.2,c.1.6.1 108584,108585 1h2eA 207 71.26 c.60.1.1 70857 1trrA 107 71.42 a.4.12.1 19017 1wpkA 146 71.43 2cohA 202 71.50 a.4.5.4,b.82.3.2 130677,130678 2h27A 73 71.78 a.4.13.2 135993 2eiyA 308 73.30 2a9dA 372 74.73 b.1.18.6,d.176.1.1 126431,126432 1bl0A 129 76.21 a.4.1.8,a.4.1.8 16053,16054 2ohhA 404 76.42 1vf1A 229 77.72 2ebyA 113 78.52 1xnfA 275 78.52 a.118.8.1 115580 2cdnA 201 78.55 c.37.1.1 130289 1kfiA 572 81.46 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1ebbA 202 81.61 c.60.1.1 64900 1ret 43 83.45 2blfA 373 83.75 1j5yA 187 85.73 a.4.5.1,d.94.2.1 71592,71593 1nfpA 228 86.03 c.1.16.2 29555 1rw2A 152 86.07 a.118.19.1 97961 1k2xA 177 87.89 d.153.1.5 90929 2r1jL 68 88.59 2a8lA 420 88.95 1hqoA 258 89.52 a.45.1.1,c.47.1.5 17749,33043