# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 4.14e-23 1vi0A 206 6.06e-23 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 1.12e-22 1zkgA 212 1.38e-22 a.4.1.9,a.121.1.1 125194,125195 2pbxA 203 1.48e-22 2f07A 197 1.83e-22 1rktA 205 2.24e-22 a.4.1.9,a.121.1.1 97623,97624 2uxuA 210 3.71e-22 3cwrA 208 4.75e-22 3ccyA 203 4.81e-22 2ibdA 204 5.36e-22 2g7sA 194 5.99e-22 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 7.01e-22 a.4.1.9,a.121.1.1 124588,124589 3bruA 222 7.21e-22 2rasA 212 7.51e-22 2qcoA 210 7.62e-22 3bcgA 215 7.76e-22 2hyjA 200 7.78e-22 2g3bA 208 1.08e-21 a.4.1.9,a.121.1.1 134558,134559 2iekA 200 1.09e-21 1pb6A 212 1.39e-21 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 1.39e-21 1qvtA 194 2.08e-21 a.4.1.9,a.121.1.1 104602,104603 1t56A 216 2.55e-21 a.4.1.9,a.121.1.1 106428,106429 2i10A 202 3.41e-21 a.4.1.9,a.121.1.1 136960,136961 1jt6A 188 3.80e-21 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 3.86e-21 2fx0A 201 3.96e-21 a.4.1.9,a.121.1.1 134269,134270 2fq4A 192 6.04e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 7.46e-21 2genA 197 1.00e-20 a.4.1.9,a.121.1.1 135062,135063 2of7A 260 1.02e-20 2jj7A 186 1.04e-20 2raeA 207 1.10e-20 2iaiA 230 1.13e-20 2zb9A 214 1.30e-20 2nx4A 194 1.33e-20 2hytA 197 1.47e-20 1ui5A 215 2.12e-20 a.4.1.9,a.121.1.1 107856,107857 3b81A 203 3.27e-20 2fbqA 235 3.51e-20 a.4.1.9,a.121.1.1 133256,133257 3cdlA 203 3.72e-20 3c2bA 221 6.19e-20 2yveA 185 1.02e-19 2dg8A 193 1.04e-19 2hkuA 215 1.25e-19 2np5A 203 1.26e-19 a.4.1.9,a.121.1.1 138424,138425 3colA 196 1.63e-19 3cjdA 198 1.70e-19 2qibA 231 2.21e-19 2o7tA 199 2.74e-19 2q24A 194 2.91e-19 2eh3A 179 3.30e-19 2iu5A 195 3.79e-19 1sgmA 191 4.51e-19 a.4.1.9,a.121.1.1 105537,105538 2o7oA 207 5.40e-19 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 8.14e-19 3bjbA 207 8.40e-19 1v7bA 185 1.01e-18 a.4.1.9,a.121.1.1 119861,119862 2d6yA 202 1.06e-18 a.4.1.9,a.121.1.1 131313,131314 2guhA 214 1.16e-18 2rekA 199 1.21e-18 1a6i 217 1.99e-18 3bqyA 209 2.03e-18 1t33A 224 2.57e-18 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 3.34e-18 2fd5A 180 4.95e-18 a.4.1.9,a.121.1.1 133291,133292 2gfnA 209 5.98e-18 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 1.06e-17 1zk8A 183 1.08e-17 a.4.1.9,a.121.1.1 125177,125178 2oi8A 216 2.26e-17 1z0xA 220 3.67e-17 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 3.80e-17 2zcmA 192 2.11e-16 2oerA 214 5.06e-16 2g7lA 243 1.17e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 2.24e-15 2hxoA 237 2.26e-15 2optA 234 2.78e-15 2id3A 225 1.38e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 5.81e-12 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.8666 2ev0A 142 1.422 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 2.300 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2pg4A 95 2.658 2dt5A 211 2.844 a.4.5.38,c.2.1.12 131708,131709 1gwcA 230 3.040 a.45.1.1,c.47.1.5 70660,70661 2jn6A 97 3.384 1lccA 51 3.541 a.35.1.5 17110 2bjcA 62 4.322 a.35.1.5 128620 1on2A 142 4.457 a.4.5.24,a.76.1.1 87103,87104 3bbyA 215 4.494 1cjgA 62 4.697 a.35.1.5 17112 2bnmA 198 5.330 a.35.1.3,b.82.1.10 128835,128836 1hlvA 131 5.752 a.4.1.7,a.4.1.7 65854,65855 1a5t 334 6.529 6paxA 133 6.788 a.4.1.5,a.4.1.5 64758,64759 1gulA 222 7.993 a.45.1.1,c.47.1.5 17675,32969 1xcbA 211 8.563 a.4.5.38,c.2.1.12 109552,109553 1nhyA 219 9.105 a.45.1.1,c.47.1.5 80520,80521 1pdnC 128 9.287 a.4.1.5 16047 1bi0 226 10.92 2qq9A 226 12.18 1fseA 74 13.11 a.4.6.2 60000 1wsuA 124 13.64 a.4.5.35,a.4.5.35 121245,121246 1jkoC 52 14.04 a.4.1.2 66809 1yn9A 169 14.30 1tadA 324 14.94 a.66.1.1,c.37.1.8 18194,32077 1w07A 659 17.22 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 3bzcA 785 17.29 1oqyA 368 18.08 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3b7hA 78 18.09 2gsqA 202 18.76 a.45.1.1,c.47.1.5 17715,33009 2aelA 374 18.91 1neqA 74 19.21 a.35.1.2 17063 1f3aA 222 19.24 a.45.1.1,c.47.1.5 17701,32995 3bs3A 76 19.62 2ve3A 444 21.08 1k0dA 260 22.85 a.45.1.1,c.47.1.5 67930,67931 2pjpA 121 23.14 1ngkA 128 23.81 a.1.1.1 85673 1p4wA 99 23.85 a.4.6.2 87783 2o3fA 111 23.97 2q7wA 396 25.41 1m0uA 249 26.26 a.45.1.1,c.47.1.5 78359,78360 1zljA 78 27.11 1gseA 221 28.23 a.45.1.1,c.47.1.5 17667,32961 1s7oA 113 28.86 a.4.13.3 105354 1b1bA 140 29.36 a.4.5.24,a.76.1.1 16215,18421 2fbkA 181 30.75 a.4.5.28 133247 2on5A 206 31.11 1hg5A 289 31.48 a.7.8.2,a.118.9.3 90360,90361 1utxA 66 32.25 a.35.1.3 108034 3c6gA 479 32.38 1ho8A 480 33.12 a.118.1.9 61107 2vd8A 391 36.86 2ictA 94 36.97 1oe8A 211 38.08 a.45.1.1,c.47.1.5 86905,86906 2auwA 170 38.49 a.35.1.10,d.331.1.1 127339,127340 1zr5A 214 39.06 c.50.1.2 125525 1k3yA 221 39.43 a.45.1.1,c.47.1.5 77245,77246 2h27A 73 41.14 a.4.13.2 135993 1g6wA 261 41.29 a.45.1.1,c.47.1.5 17751,33045 1ft9A 222 42.49 a.4.5.4,b.82.3.1 16107,28131 1u8bA 133 42.75 2fmyA 220 42.97 3bofA 566 43.43 1je8A 82 43.45 a.4.6.2 77108 1vz0A 230 43.55 a.4.14.1,d.268.1.1 108929,108930 1bl0A 129 43.55 a.4.1.8,a.4.1.8 16053,16054 2zcwA 202 45.29 2bkmA 128 45.55 1pveA 72 46.85 a.189.1.1 104322 1dm1A 146 47.50 a.1.1.2 15153 1s69A 124 47.64 a.1.1.1 105305 2gauA 232 48.90 a.4.5.4,b.82.3.2 134894,134895 2gkmA 136 50.11 1k2xA 177 50.28 d.153.1.5 90929 2cro 71 51.36 1a0eA 443 51.74 c.1.15.3 29537 1r03A 182 51.79 a.25.1.1 104675 2b2hA 399 51.99 1nfp 228 52.33 2oa6A 320 52.49 1f5tA 121 52.79 a.4.5.24,a.76.1.1 16203,18409 2hpkA 208 53.91 1alvA 173 54.23 a.39.1.8 17370 1l7vA 326 54.73 f.22.1.1 73672 1ret 43 55.03 1v2aA 210 55.59 a.45.1.1,c.47.1.5 100263,100264 2q88A 257 56.40 2scpA 174 56.81 a.39.1.5 17256 2croA 71 57.18 a.35.1.2 17038 1r69A 69 58.02 a.35.1.2 17028 1vfsA 386 58.27 b.49.2.2,c.1.6.1 108584,108585 1rzsA 61 58.50 a.35.1.2 105139 1wpkA 146 59.78 1zgwA 139 62.03 1aw9A 216 62.09 a.45.1.1,c.47.1.5 17736,33030 2fdvA 476 62.18 1gcvA 140 62.50 a.1.1.2 15410 2ohhA 404 63.72 1qpzA 340 64.88 a.35.1.5,c.93.1.1 17097,35673 1kfiA 572 65.79 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1hqoA 258 68.83 a.45.1.1,c.47.1.5 17749,33043 2blfA 373 69.37 1wdvA 152 69.64 d.116.1.1 114539 2e60A 101 71.57 1w0bA 102 71.85 a.7.11.1 108985 3c8yA 574 73.15 2cohA 202 73.28 a.4.5.4,b.82.3.2 130677,130678 2r1jL 68 73.65 2a9dA 372 74.21 b.1.18.6,d.176.1.1 126431,126432 3d0cA 314 74.51 2ebyA 113 75.28 2h12A 436 75.36 2a8lA 420 76.22 1b0nA 111 77.66 a.34.1.1,a.35.1.3 17001,17064 1vf1A 229 78.37 2ivmA 150 80.30 1j5yA 187 80.74 a.4.5.1,d.94.2.1 71592,71593 2d0eA 407 81.24 1y2qA 143 81.77 1oyiA 82 87.97 a.4.5.19 93729 1hcrA 52 87.99 a.4.1.2 16020 1fx7A 230 89.31 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090