# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f07A 197 4.76e-22 3bhqA 211 6.96e-22 2pbxA 203 1.58e-21 3bruA 222 1.68e-21 1rktA 205 1.85e-21 a.4.1.9,a.121.1.1 97623,97624 1vi0A 206 2.04e-21 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 2.37e-21 a.4.1.9,a.121.1.1 88017,88018 2uxuA 210 2.42e-21 3bcgA 215 2.47e-21 2g7sA 194 4.16e-21 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 4.26e-21 2g3bA 208 1.03e-20 a.4.1.9,a.121.1.1 134558,134559 1zkgA 212 1.03e-20 a.4.1.9,a.121.1.1 125194,125195 1t56A 216 1.04e-20 a.4.1.9,a.121.1.1 106428,106429 1z77A 200 1.05e-20 a.4.1.9,a.121.1.1 124588,124589 2hyjA 200 1.07e-20 2ibdA 204 1.12e-20 2rasA 212 1.52e-20 2hytA 197 1.52e-20 2qtqA 213 1.94e-20 3ccyA 203 1.97e-20 2i10A 202 2.73e-20 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 2.94e-20 a.4.1.9,a.121.1.1 134269,134270 3crjA 199 3.19e-20 2iekA 200 3.66e-20 2fq4A 192 4.17e-20 a.4.1.9,a.121.1.1 133937,133938 2jj7A 186 4.19e-20 3cwrA 208 4.34e-20 2iaiA 230 5.66e-20 2genA 197 7.12e-20 a.4.1.9,a.121.1.1 135062,135063 3cjdA 198 8.40e-20 2qcoA 210 8.61e-20 2dg7A 195 9.76e-20 2fbqA 235 1.42e-19 a.4.1.9,a.121.1.1 133256,133257 2nx4A 194 1.75e-19 1qvtA 194 1.87e-19 a.4.1.9,a.121.1.1 104602,104603 3cdlA 203 2.27e-19 1ui5A 215 2.52e-19 a.4.1.9,a.121.1.1 107856,107857 2zb9A 214 2.77e-19 2raeA 207 4.71e-19 2of7A 260 4.95e-19 3b81A 203 6.69e-19 1jt6A 188 6.92e-19 a.4.1.9,a.121.1.1 67247,67248 3c2bA 221 8.94e-19 3colA 196 2.19e-18 2np5A 203 2.29e-18 a.4.1.9,a.121.1.1 138424,138425 2qibA 231 2.75e-18 2guhA 214 3.69e-18 2d6yA 202 4.47e-18 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 6.78e-18 1sgmA 191 8.06e-18 a.4.1.9,a.121.1.1 105537,105538 2yveA 185 1.12e-17 2o7tA 199 1.25e-17 2eh3A 179 1.45e-17 3bjbA 207 1.61e-17 2rekA 199 1.84e-17 1v7bA 185 1.88e-17 a.4.1.9,a.121.1.1 119861,119862 2dg8A 193 1.92e-17 2qwtA 196 2.67e-17 2fd5A 180 2.73e-17 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 3.78e-17 1t33A 224 6.42e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 1.25e-16 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 1.61e-16 1a6i 217 1.95e-16 2gfnA 209 2.07e-16 a.4.1.9,a.121.1.1 135101,135102 3bqyA 209 2.32e-16 2o7oA 207 3.11e-16 a.4.1.9,a.121.1.1 138930,138931 2zcmA 192 6.24e-16 2vprA 207 7.47e-16 2oi8A 216 9.31e-16 2iu5A 195 9.84e-16 1z0xA 220 1.16e-15 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 8.25e-15 2g7lA 243 1.13e-14 a.4.1.9,a.121.1.1 134734,134735 2id3A 225 1.58e-14 a.4.1.9,a.121.1.1 137261,137262 2tct 207 2.28e-14 2optA 234 4.83e-14 2oerA 214 1.01e-12 2hxoA 237 1.26e-12 2g7gA 213 1.60e-09 a.4.1.9,a.121.1.1 134732,134733 1gwcA 230 3.798 a.45.1.1,c.47.1.5 70660,70661 2gsqA 202 5.029 a.45.1.1,c.47.1.5 17715,33009 2oxoA 103 5.056 1gulA 222 5.454 a.45.1.1,c.47.1.5 17675,32969 3bbyA 215 6.166 1hg5A 289 6.725 a.7.8.2,a.118.9.3 90360,90361 1k3yA 221 8.162 a.45.1.1,c.47.1.5 77245,77246 2ev0A 142 8.791 a.4.5.24,a.76.1.1 132413,132414 1on2A 142 9.006 a.4.5.24,a.76.1.1 87103,87104 1gseA 221 9.268 a.45.1.1,c.47.1.5 17667,32961 2on5A 206 9.772 1f3aA 222 11.24 a.45.1.1,c.47.1.5 17701,32995 2pg4A 95 11.71 1vf1A 229 12.35 1qnrA 344 15.40 c.1.8.3 28834 1m0uA 249 16.43 a.45.1.1,c.47.1.5 78359,78360 1b48A 221 16.74 a.45.1.1,c.47.1.5 17703,32997 2bvyA 475 17.31 b.1.18.2,c.1.8.3 129301,129302 1oe8A 211 17.46 a.45.1.1,c.47.1.5 86905,86906 6paxA 133 18.21 a.4.1.5,a.4.1.5 64758,64759 1pdnC 128 18.43 a.4.1.5 16047 2dt5A 211 20.19 a.4.5.38,c.2.1.12 131708,131709 1iyhA 198 21.48 a.45.1.1,c.47.1.5 83790,83791 1glqA 209 24.01 a.45.1.1,c.47.1.5 17588,32882 2imiA 221 25.15 2jn6A 97 27.78 1cjgA 62 36.57 a.35.1.5 17112 1hqoA 258 39.13 a.45.1.1,c.47.1.5 17749,33043 1lccA 51 41.09 a.35.1.5 17110 1m12A 84 42.02 a.64.1.1 84745 1pveA 72 42.23 a.189.1.1 104322 1b37B 472 43.39 c.3.1.2,d.16.1.5 30390,37954 1fw1A 216 43.64 a.45.1.1,c.47.1.5 60051,60052 1ho8A 480 43.95 a.118.1.9 61107 2q0zX 339 46.38 1ea2A 131 51.50 d.17.4.3 64860 1a0eA 443 52.90 c.1.15.3 29537 1oqyA 368 53.19 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2osxA 481 53.37 3b7hA 78 55.10 2je8A 848 55.23 1pgtA 210 56.26 a.45.1.1,c.47.1.5 17515,32809 2gsoA 393 57.18 1v2aA 210 58.01 a.45.1.1,c.47.1.5 100263,100264 1cbyA 259 59.37 d.103.1.1 40705 1fj2A 232 60.51 c.69.1.14 34720 1dm1A 146 61.05 a.1.1.2 15153 2napA 723 61.17 b.52.2.2,c.81.1.1 26926,35334 2bjcA 62 62.44 a.35.1.5 128620 2cohA 202 63.44 a.4.5.4,b.82.3.2 130677,130678 1nstA 325 63.98 c.37.1.5 31951 1tu7A 208 64.75 a.45.1.1,c.47.1.5 112653,112654 1b4pA 217 66.57 a.45.1.1,c.47.1.5 83158,83159 2bnmA 198 66.62 a.35.1.3,b.82.1.10 128835,128836 1y5eA 169 70.24 c.57.1.1 122632 1m40A 263 70.26 e.3.1.1 74437 2ig3A 127 70.27 1zcaA 359 70.66 a.66.1.1,c.37.1.8 124897,124898 2yxoA 267 71.99 1ehiA 377 75.91 c.30.1.2,d.142.1.1 31716,41484 2oo2A 86 76.47 3cmgA 667 77.51 1hlvA 131 78.02 a.4.1.7,a.4.1.7 65854,65855 2zcwA 202 78.85 1rzsA 61 79.06 a.35.1.2 105139 1k0dA 260 79.83 a.45.1.1,c.47.1.5 67930,67931 3bs3A 76 80.32 1h5vA 304 86.21 c.1.8.3 70898 1ft9A 222 87.14 a.4.5.4,b.82.3.1 16107,28131 2cz2A 223 88.05 2hq1A 247 89.63