# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.15e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 3.47e-22 2f07A 197 3.93e-22 2pbxA 203 4.75e-22 2id6A 202 5.38e-22 1pb6A 212 9.13e-22 a.4.1.9,a.121.1.1 88017,88018 1rktA 205 9.94e-22 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 1.04e-21 2ibdA 204 1.41e-21 1zkgA 212 1.42e-21 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 1.53e-21 2hyjA 200 2.06e-21 2g7sA 194 2.42e-21 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 2.54e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 2.73e-21 2uxuA 210 2.82e-21 3cwrA 208 3.13e-21 2iekA 200 3.43e-21 3crjA 199 4.19e-21 3bcgA 215 4.59e-21 2i10A 202 5.98e-21 a.4.1.9,a.121.1.1 136960,136961 1qvtA 194 8.48e-21 a.4.1.9,a.121.1.1 104602,104603 1t56A 216 8.83e-21 a.4.1.9,a.121.1.1 106428,106429 2fx0A 201 9.19e-21 a.4.1.9,a.121.1.1 134269,134270 2qcoA 210 1.07e-20 2g3bA 208 1.21e-20 a.4.1.9,a.121.1.1 134558,134559 2jj7A 186 1.29e-20 2hytA 197 1.31e-20 2fq4A 192 1.91e-20 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 2.00e-20 2iaiA 230 2.50e-20 1jt6A 188 2.62e-20 a.4.1.9,a.121.1.1 67247,67248 2dg7A 195 2.81e-20 2genA 197 2.93e-20 a.4.1.9,a.121.1.1 135062,135063 1ui5A 215 2.95e-20 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 4.71e-20 a.4.1.9,a.121.1.1 133256,133257 2raeA 207 9.18e-20 2nx4A 194 1.24e-19 3cdlA 203 1.25e-19 2of7A 260 1.46e-19 3b81A 203 1.91e-19 2zb9A 214 1.98e-19 3c2bA 221 2.10e-19 2dg8A 193 3.35e-19 2o7tA 199 4.04e-19 2yveA 185 4.32e-19 2q24A 194 4.41e-19 3colA 196 4.61e-19 3cjdA 198 4.74e-19 2hkuA 215 5.58e-19 2np5A 203 5.81e-19 a.4.1.9,a.121.1.1 138424,138425 2eh3A 179 6.83e-19 2iu5A 195 1.16e-18 2fd5A 180 1.28e-18 a.4.1.9,a.121.1.1 133291,133292 2qibA 231 1.48e-18 1sgmA 191 1.65e-18 a.4.1.9,a.121.1.1 105537,105538 3bjbA 207 1.92e-18 2d6yA 202 1.95e-18 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 2.06e-18 a.4.1.9,a.121.1.1 138930,138931 2guhA 214 4.12e-18 3bniA 229 4.41e-18 2rekA 199 4.60e-18 1v7bA 185 5.73e-18 a.4.1.9,a.121.1.1 119861,119862 3bqyA 209 7.44e-18 1t33A 224 1.08e-17 a.4.1.9,a.121.1.1 106295,106296 1a6i 217 1.31e-17 2vprA 207 1.76e-17 1zk8A 183 1.86e-17 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 2.79e-17 2qkoA 215 3.47e-17 2oi8A 216 5.34e-17 2zcmA 192 9.89e-17 2gfnA 209 1.60e-16 a.4.1.9,a.121.1.1 135101,135102 1z0xA 220 2.63e-16 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 2.62e-15 a.4.1.9,a.121.1.1 134734,134735 2oerA 214 3.13e-15 2optA 234 3.92e-15 2tct 207 4.64e-15 2hxoA 237 7.46e-15 2id3A 225 5.42e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 2.69e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 0.8839 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.402 a.4.5.38,c.2.1.12 131708,131709 2jn6A 97 1.475 1c0wA 225 1.514 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 6paxA 133 1.624 a.4.1.5,a.4.1.5 64758,64759 2pg4A 95 1.802 2oxoA 103 2.274 1pdnC 128 2.543 a.4.1.5 16047 1hlvA 131 2.582 a.4.1.7,a.4.1.7 65854,65855 2bnmA 198 2.682 a.35.1.3,b.82.1.10 128835,128836 2pjpA 121 3.524 1lccA 51 3.809 a.35.1.5 17110 1on2A 142 3.863 a.4.5.24,a.76.1.1 87103,87104 1xcbA 211 3.976 a.4.5.38,c.2.1.12 109552,109553 1cjgA 62 5.102 a.35.1.5 17112 3b7hA 78 5.248 2bjcA 62 5.450 a.35.1.5 128620 1gwcA 230 6.012 a.45.1.1,c.47.1.5 70660,70661 3bbyA 215 6.105 1bi0 226 7.724 2hpkA 208 8.183 2qq9A 226 8.741 1s7oA 113 10.49 a.4.13.3 105354 3bs3A 76 11.52 2o3fA 111 11.73 1gulA 222 14.17 a.45.1.1,c.47.1.5 17675,32969 2dtrA 226 14.99 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fseA 74 15.47 a.4.6.2 60000 1k0dA 260 16.87 a.45.1.1,c.47.1.5 67930,67931 1utxA 66 18.54 a.35.1.3 108034 1jkoC 52 18.81 a.4.1.2 66809 1s69A 124 21.29 a.1.1.1 105305 1zljA 78 22.25 1tadA 324 24.91 a.66.1.1,c.37.1.8 18194,32077 2ictA 94 25.75 2auwA 170 26.84 a.35.1.10,d.331.1.1 127339,127340 3bzcA 785 26.90 1b1bA 140 29.30 a.4.5.24,a.76.1.1 16215,18421 1hg5A 289 29.35 a.7.8.2,a.118.9.3 90360,90361 1je8A 82 30.18 a.4.6.2 77108 2croA 71 30.28 a.35.1.2 17038 1r69A 69 30.51 a.35.1.2 17028 1f3aA 222 30.52 a.45.1.1,c.47.1.5 17701,32995 2cro 71 31.70 2q7wA 396 32.38 1jj2U 70 32.58 a.2.2.1 63106 1a5t 334 34.93 1neqA 74 35.11 a.35.1.2 17063 1rzsA 61 35.15 a.35.1.2 105139 1zr5A 214 36.37 c.50.1.2 125525 2blfA 373 36.66 2ebyA 113 36.83 1p4wA 99 36.84 a.4.6.2 87783 1ehiA 377 37.52 c.30.1.2,d.142.1.1 31716,41484 1u8bA 133 37.76 1v2aA 210 38.02 a.45.1.1,c.47.1.5 100263,100264 1efaA 333 38.51 a.35.1.5,c.93.1.1 17106,35691 1f5tA 121 39.83 a.4.5.24,a.76.1.1 16203,18409 1oqyA 368 40.25 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2h12A 436 41.19 2de3A 365 41.50 2e60A 101 41.63 1ret 43 42.55 2aelA 374 42.93 2b5aA 77 43.39 a.35.1.3 127882 2q7eA 291 43.99 1fx7A 230 44.60 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1mmoB 384 45.15 a.25.1.2 16768 2on5A 206 45.78 1y9qA 192 46.57 a.35.1.8,b.82.1.15 116592,116593 1qpzA 340 46.89 a.35.1.5,c.93.1.1 17097,35673 1y7yA 74 47.42 a.35.1.3 122729 1y0uA 96 47.82 a.4.5.5 116310 1vf1A 229 48.44 1aw9A 216 49.00 a.45.1.1,c.47.1.5 17736,33030 1l7vA 326 50.44 f.22.1.1 73672 1wpkA 146 50.80 2a9dA 372 53.30 b.1.18.6,d.176.1.1 126431,126432 1k3yA 221 53.85 a.45.1.1,c.47.1.5 77245,77246 1jftA 340 54.67 a.35.1.5,c.93.1.1 66652,66653 1k78A 149 55.53 a.4.1.5,a.4.1.5 68255,68256 1j5yA 187 55.71 a.4.5.1,d.94.2.1 71592,71593 2scpA 174 56.16 a.39.1.5 17256 1sfxA 109 57.09 a.4.5.50 105505 1w07A 659 57.18 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 3bofA 566 57.27 1m0uA 249 57.39 a.45.1.1,c.47.1.5 78359,78360 1r8eA 278 58.41 a.6.1.3,d.60.1.1 104843,104844 2h09A 155 59.23 3bct 457 60.25 2gkmA 136 60.91 2r1jL 68 61.73 1b0nA 111 62.04 a.34.1.1,a.35.1.3 17001,17064 1r69 69 62.09 3cecA 104 62.13 2f6rA 281 63.30 1ho8A 480 63.85 a.118.1.9 61107 1xsvA 113 65.22 a.4.13.3 116003 1vz0A 230 65.65 a.4.14.1,d.268.1.1 108929,108930 1k2xA 177 65.91 d.153.1.5 90929 1wsuA 124 65.99 a.4.5.35,a.4.5.35 121245,121246 1a0eA 443 66.40 c.1.15.3 29537 2f4mB 61 66.56 a.189.1.1 132931 3c8yA 574 70.27 2j3tD 219 70.45 1tqmA 282 72.38 a.4.5.56,d.144.1.9 107236,107237 1wdvA 152 74.03 d.116.1.1 114539 1ft9A 222 74.87 a.4.5.4,b.82.3.1 16107,28131 1vpwA 340 75.97 a.35.1.5,c.93.1.1 17087,35680 1lea 84 76.59 1bl0A 129 76.89 a.4.1.8,a.4.1.8 16053,16054 2vd8A 391 77.22 1sedA 117 79.31 a.219.1.1 105449 1hqoA 258 79.46 a.45.1.1,c.47.1.5 17749,33043 1g2hA 61 79.81 a.4.1.12 60224 1w96A 554 80.71 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1j5uA 136 81.35 d.208.1.1 71584 1zt2B 212 81.37 a.262.1.1 125625 2ohhA 404 82.25 2zcwA 202 84.16 2ivmA 150 85.47 2qz8A 149 85.84 2ig3A 127 87.36 1r1uA 106 87.64 a.4.5.5 104771 2fjrA 189 89.72 1anf 370 89.80