# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.09e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 1.71e-22 2id6A 202 2.35e-22 2pbxA 203 2.40e-22 2f07A 197 2.68e-22 1rktA 205 4.23e-22 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 5.89e-22 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 6.21e-22 1pb6A 212 7.09e-22 a.4.1.9,a.121.1.1 88017,88018 2ibdA 204 7.65e-22 2rasA 212 9.66e-22 2g7sA 194 1.04e-21 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 1.12e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 1.17e-21 2hyjA 200 1.26e-21 2iekA 200 1.31e-21 2uxuA 210 1.47e-21 3crjA 199 1.94e-21 3cwrA 208 2.10e-21 3bcgA 215 2.23e-21 2i10A 202 2.40e-21 a.4.1.9,a.121.1.1 136960,136961 1qvtA 194 3.92e-21 a.4.1.9,a.121.1.1 104602,104603 2qcoA 210 4.85e-21 2fx0A 201 5.09e-21 a.4.1.9,a.121.1.1 134269,134270 2g3bA 208 5.16e-21 a.4.1.9,a.121.1.1 134558,134559 2jj7A 186 5.45e-21 1t56A 216 5.52e-21 a.4.1.9,a.121.1.1 106428,106429 2hytA 197 6.89e-21 2fq4A 192 8.38e-21 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 9.45e-21 2dg7A 195 1.19e-20 1jt6A 188 1.34e-20 a.4.1.9,a.121.1.1 67247,67248 2genA 197 1.47e-20 a.4.1.9,a.121.1.1 135062,135063 2iaiA 230 1.64e-20 1ui5A 215 2.20e-20 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 2.91e-20 a.4.1.9,a.121.1.1 133256,133257 2raeA 207 4.19e-20 2of7A 260 4.70e-20 2nx4A 194 5.70e-20 3cdlA 203 8.81e-20 2zb9A 214 9.71e-20 3b81A 203 1.13e-19 3c2bA 221 1.15e-19 2yveA 185 1.61e-19 2dg8A 193 1.89e-19 2np5A 203 2.46e-19 a.4.1.9,a.121.1.1 138424,138425 2o7tA 199 2.46e-19 3cjdA 198 2.47e-19 2q24A 194 2.53e-19 2eh3A 179 2.72e-19 2hkuA 215 2.92e-19 3colA 196 3.13e-19 1sgmA 191 6.75e-19 a.4.1.9,a.121.1.1 105537,105538 2fd5A 180 7.81e-19 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 9.05e-19 2qibA 231 9.57e-19 2o7oA 207 1.16e-18 a.4.1.9,a.121.1.1 138930,138931 3bjbA 207 1.46e-18 2d6yA 202 1.81e-18 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 1.86e-18 a.4.1.9,a.121.1.1 119861,119862 2rekA 199 2.31e-18 2guhA 214 2.88e-18 3bniA 229 3.09e-18 3bqyA 209 3.78e-18 1a6i 217 6.69e-18 1t33A 224 7.14e-18 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 7.69e-18 1zk8A 183 1.11e-17 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 1.72e-17 2qkoA 215 2.12e-17 2oi8A 216 3.85e-17 2zcmA 192 4.72e-17 2gfnA 209 9.36e-17 a.4.1.9,a.121.1.1 135101,135102 1z0xA 220 1.25e-16 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 1.65e-15 a.4.1.9,a.121.1.1 134734,134735 2oerA 214 1.83e-15 2optA 234 2.79e-15 2tct 207 2.90e-15 2hxoA 237 5.46e-15 2id3A 225 4.06e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.80e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 1.269 a.4.5.24,a.76.1.1 132413,132414 2pg4A 95 1.621 2jn6A 97 1.675 2dt5A 211 1.696 a.4.5.38,c.2.1.12 131708,131709 1c0wA 225 1.701 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2bnmA 198 1.914 a.35.1.3,b.82.1.10 128835,128836 1hlvA 131 2.038 a.4.1.7,a.4.1.7 65854,65855 2oxoA 103 2.451 6paxA 133 2.599 a.4.1.5,a.4.1.5 64758,64759 1lccA 51 3.592 a.35.1.5 17110 1pdnC 128 3.668 a.4.1.5 16047 1cjgA 62 4.076 a.35.1.5 17112 3b7hA 78 4.861 1on2A 142 5.165 a.4.5.24,a.76.1.1 87103,87104 1gwcA 230 5.647 a.45.1.1,c.47.1.5 70660,70661 3bbyA 215 5.887 1xcbA 211 6.147 a.4.5.38,c.2.1.12 109552,109553 2hpkA 208 6.241 1bi0 226 6.677 2bjcA 62 6.775 a.35.1.5 128620 2pjpA 121 8.655 1s7oA 113 8.757 a.4.13.3 105354 2qq9A 226 10.20 3bs3A 76 11.33 1gulA 222 11.95 a.45.1.1,c.47.1.5 17675,32969 2o3fA 111 12.84 1fseA 74 13.70 a.4.6.2 60000 1jkoC 52 15.57 a.4.1.2 66809 1zljA 78 18.66 1k0dA 260 19.25 a.45.1.1,c.47.1.5 67930,67931 1utxA 66 19.29 a.35.1.3 108034 1a5t 334 20.61 1hg5A 289 20.85 a.7.8.2,a.118.9.3 90360,90361 2ictA 94 24.33 2auwA 170 24.99 a.35.1.10,d.331.1.1 127339,127340 2dtrA 226 25.55 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1neqA 74 27.64 a.35.1.2 17063 1u8bA 133 28.90 1r69A 69 29.15 a.35.1.2 17028 1je8A 82 29.44 a.4.6.2 77108 3bzcA 785 30.07 2aelA 374 30.13 2croA 71 30.89 a.35.1.2 17038 1y9qA 192 31.21 a.35.1.8,b.82.1.15 116592,116593 1f3aA 222 31.78 a.45.1.1,c.47.1.5 17701,32995 1y0uA 96 32.10 a.4.5.5 116310 1rzsA 61 32.17 a.35.1.2 105139 1s69A 124 32.89 a.1.1.1 105305 2cro 71 33.09 1ret 43 34.25 1p4wA 99 34.37 a.4.6.2 87783 1jj2U 70 34.37 a.2.2.1 63106 2q7eA 291 36.72 2q7wA 396 37.30 1f5tA 121 37.85 a.4.5.24,a.76.1.1 16203,18409 1zr5A 214 39.55 c.50.1.2 125525 1oqyA 368 41.83 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ehiA 377 44.01 c.30.1.2,d.142.1.1 31716,41484 3bofA 566 44.14 2on5A 206 44.71 2b5aA 77 45.67 a.35.1.3 127882 2scpA 174 46.51 a.39.1.5 17256 1k2xA 177 46.94 d.153.1.5 90929 1b1bA 140 48.34 a.4.5.24,a.76.1.1 16215,18421 1m0uA 249 48.63 a.45.1.1,c.47.1.5 78359,78360 1tqmA 282 49.58 a.4.5.56,d.144.1.9 107236,107237 1y7yA 74 49.77 a.35.1.3 122729 1mmoB 384 49.87 a.25.1.2 16768 2h12A 436 50.13 1k3yA 221 52.87 a.45.1.1,c.47.1.5 77245,77246 1l7vA 326 53.22 f.22.1.1 73672 2de3A 365 53.65 1vf1A 229 53.71 2ebyA 113 54.13 1wpkA 146 54.23 2zcwA 202 54.37 1vz0A 230 54.57 a.4.14.1,d.268.1.1 108929,108930 3bct 457 54.75 2blfA 373 55.27 2e60A 101 56.93 1nhyA 219 57.04 a.45.1.1,c.47.1.5 80520,80521 1sfxA 109 57.25 a.4.5.50 105505 1sedA 117 57.46 a.219.1.1 105449 1w07A 659 58.38 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1qpzA 340 59.25 a.35.1.5,c.93.1.1 17097,35673 1j5yA 187 59.76 a.4.5.1,d.94.2.1 71592,71593 1r69 69 61.36 1wsuA 124 61.42 a.4.5.35,a.4.5.35 121245,121246 2r1jL 68 62.48 1fx7A 230 62.57 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1tadA 324 63.22 a.66.1.1,c.37.1.8 18194,32077 1b0nA 111 65.61 a.34.1.1,a.35.1.3 17001,17064 3cecA 104 65.97 1ft9A 222 66.81 a.4.5.4,b.82.3.1 16107,28131 1jftA 340 67.01 a.35.1.5,c.93.1.1 66652,66653 1ho8A 480 67.29 a.118.1.9 61107 2h09A 155 67.38 1xsvA 113 68.15 a.4.13.3 116003 1bl0A 129 68.32 a.4.1.8,a.4.1.8 16053,16054 2gkmA 136 69.82 2cohA 202 70.17 a.4.5.4,b.82.3.2 130677,130678 1v2aA 210 70.44 a.45.1.1,c.47.1.5 100263,100264 1efaA 333 74.49 a.35.1.5,c.93.1.1 17106,35691 1a0eA 443 75.46 c.1.15.3 29537 2ivmA 150 75.94 2qz8A 149 76.07 2j3tD 219 77.56 1aw9A 216 78.04 a.45.1.1,c.47.1.5 17736,33030 2f6rA 281 79.63 1hqoA 258 80.20 a.45.1.1,c.47.1.5 17749,33043 2a8lA 420 81.09 1dm1A 146 82.64 a.1.1.2 15153 1adrA 76 83.13 a.35.1.2 17042 2a9dA 372 85.46 b.1.18.6,d.176.1.1 126431,126432 1alvA 173 85.89 a.39.1.8 17370 1r1uA 106 86.23 a.4.5.5 104771 1wdvA 152 89.50 d.116.1.1 114539 1rp3A 239 89.58 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1vpwA 340 89.92 a.35.1.5,c.93.1.1 17087,35680