# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.01e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 4.68e-22 2pbxA 203 5.59e-22 2f07A 197 6.95e-22 2id6A 202 7.41e-22 1zkgA 212 1.08e-21 a.4.1.9,a.121.1.1 125194,125195 1rktA 205 1.31e-21 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 1.56e-21 2uxuA 210 1.59e-21 3bcgA 215 1.65e-21 2ibdA 204 1.68e-21 2rasA 212 1.77e-21 3cwrA 208 1.90e-21 1pb6A 212 2.33e-21 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 2.42e-21 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 2.76e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 2.86e-21 2hyjA 200 3.45e-21 2iekA 200 4.77e-21 2g3bA 208 4.89e-21 a.4.1.9,a.121.1.1 134558,134559 2qcoA 210 5.06e-21 3crjA 199 5.55e-21 2i10A 202 6.13e-21 a.4.1.9,a.121.1.1 136960,136961 1t56A 216 1.13e-20 a.4.1.9,a.121.1.1 106428,106429 2dg7A 195 1.24e-20 2fq4A 192 1.34e-20 a.4.1.9,a.121.1.1 133937,133938 2genA 197 1.68e-20 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 1.83e-20 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 1.86e-20 2fx0A 201 1.96e-20 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 2.80e-20 2iaiA 230 2.86e-20 2hytA 197 2.87e-20 2of7A 260 3.03e-20 2nx4A 194 3.43e-20 2jj7A 186 3.45e-20 2fbqA 235 3.58e-20 a.4.1.9,a.121.1.1 133256,133257 1jt6A 188 4.15e-20 a.4.1.9,a.121.1.1 67247,67248 2raeA 207 4.58e-20 2zb9A 214 5.57e-20 2yveA 185 6.27e-20 3cdlA 203 7.26e-20 1ui5A 215 7.80e-20 a.4.1.9,a.121.1.1 107856,107857 2dg8A 193 1.34e-19 3b81A 203 1.69e-19 3c2bA 221 2.56e-19 2eh3A 179 3.30e-19 2q24A 194 4.83e-19 3colA 196 5.00e-19 2np5A 203 5.30e-19 a.4.1.9,a.121.1.1 138424,138425 2hkuA 215 5.42e-19 2o7tA 199 6.73e-19 2o7oA 207 8.38e-19 a.4.1.9,a.121.1.1 138930,138931 1sgmA 191 9.38e-19 a.4.1.9,a.121.1.1 105537,105538 3bjbA 207 1.24e-18 2qibA 231 1.27e-18 2guhA 214 1.43e-18 2iu5A 195 1.79e-18 1v7bA 185 2.58e-18 a.4.1.9,a.121.1.1 119861,119862 2fd5A 180 3.06e-18 a.4.1.9,a.121.1.1 133291,133292 3bqyA 209 3.16e-18 2d6yA 202 3.16e-18 a.4.1.9,a.121.1.1 131313,131314 3bniA 229 3.92e-18 1zk8A 183 6.34e-18 a.4.1.9,a.121.1.1 125177,125178 1a6i 217 6.96e-18 2rekA 199 7.14e-18 2vprA 207 7.74e-18 1t33A 224 1.11e-17 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 2.54e-17 2oi8A 216 3.79e-17 2gfnA 209 4.35e-17 a.4.1.9,a.121.1.1 135101,135102 2qkoA 215 6.29e-17 2zcmA 192 1.01e-16 1z0xA 220 3.49e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 8.07e-16 2g7lA 243 1.18e-15 a.4.1.9,a.121.1.1 134734,134735 2optA 234 4.64e-15 2tct 207 9.06e-15 2hxoA 237 1.53e-14 2id3A 225 7.78e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 8.32e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 0.8369 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.251 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1on2A 142 1.440 a.4.5.24,a.76.1.1 87103,87104 2oxoA 103 4.673 2jn6A 97 5.405 2dt5A 211 5.579 a.4.5.38,c.2.1.12 131708,131709 1f3aA 222 6.168 a.45.1.1,c.47.1.5 17701,32995 2pg4A 95 7.290 2bnmA 198 8.518 a.35.1.3,b.82.1.10 128835,128836 6paxA 133 9.370 a.4.1.5,a.4.1.5 64758,64759 2pjpA 121 9.735 1pdnC 128 10.12 a.4.1.5 16047 2qq9A 226 10.26 1lccA 51 10.79 a.35.1.5 17110 1b1bA 140 10.97 a.4.5.24,a.76.1.1 16215,18421 1vf1A 229 11.01 1gulA 222 11.94 a.45.1.1,c.47.1.5 17675,32969 1k3yA 221 12.23 a.45.1.1,c.47.1.5 77245,77246 1ho8A 480 12.28 a.118.1.9 61107 1xcbA 211 12.65 a.4.5.38,c.2.1.12 109552,109553 1hlvA 131 12.76 a.4.1.7,a.4.1.7 65854,65855 1bi0 226 12.85 1oqyA 368 13.52 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1gwcA 230 13.53 a.45.1.1,c.47.1.5 70660,70661 2bjcA 62 13.88 a.35.1.5 128620 2ig3A 127 14.05 2dtrA 226 14.60 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3bbyA 215 15.03 1jkoC 52 15.26 a.4.1.2 66809 1cjgA 62 17.48 a.35.1.5 17112 2fbkA 181 19.75 a.4.5.28 133247 3bzcA 785 22.56 1oe8A 211 23.35 a.45.1.1,c.47.1.5 86905,86906 1m0uA 249 23.38 a.45.1.1,c.47.1.5 78359,78360 1gseA 221 23.67 a.45.1.1,c.47.1.5 17667,32961 1hg5A 289 24.45 a.7.8.2,a.118.9.3 90360,90361 1oktA 211 26.75 a.45.1.1,c.47.1.5 93272,93273 1fx7A 230 30.10 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1w07A 659 30.34 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1ft9A 222 30.41 a.4.5.4,b.82.3.1 16107,28131 1yn9A 169 32.37 1tadA 324 33.33 a.66.1.1,c.37.1.8 18194,32077 1alvA 173 33.51 a.39.1.8 17370 1ret 43 34.78 1bl0A 129 35.67 a.4.1.8,a.4.1.8 16053,16054 1fseA 74 36.58 a.4.6.2 60000 1a5t 334 36.67 1pveA 72 37.28 a.189.1.1 104322 2blfA 373 38.02 1zljA 78 42.53 1wpkA 146 43.84 2dtr 226 46.18 2sttA 96 47.12 a.4.5.21 16163 1iyhA 198 48.57 a.45.1.1,c.47.1.5 83790,83791 1mc3A 296 49.65 c.68.1.6 78943 1neqA 74 49.69 a.35.1.2 17063 2h09A 155 52.35 2e9xA 149 58.21 2bbrA 195 59.77 2hpkA 208 60.05 1p4wA 99 61.70 a.4.6.2 87783 3bs3A 76 61.78 1goxA 369 62.00 c.1.4.1 28607 1jj2U 70 62.90 a.2.2.1 63106 3b7hA 78 63.62 1kgsA 225 65.10 a.4.6.1,c.23.1.1 68596,68597 2gsqA 202 65.88 a.45.1.1,c.47.1.5 17715,33009 1pgtA 210 66.02 a.45.1.1,c.47.1.5 17515,32809 1je8A 82 67.03 a.4.6.2 77108 1nstA 325 71.38 c.37.1.5 31951 1oyiA 82 72.21 a.4.5.19 93729 1k0dA 260 72.74 a.45.1.1,c.47.1.5 67930,67931 1lea 84 73.69 2cw8A 537 74.74 1b48A 221 75.21 a.45.1.1,c.47.1.5 17703,32997 1s7oA 113 77.38 a.4.13.3 105354 1g73A 162 78.25 a.7.4.1 16332 1aw9A 216 79.85 a.45.1.1,c.47.1.5 17736,33030 1eyyA 510 81.88 c.82.1.1 35389 2v27A 275 82.67 2ictA 94 85.68 2eiyA 308 86.70 1zr6A 503 87.39 2j3tD 219 88.29 3bct 457 89.07