# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 8.17e-21 1vi0A 206 8.92e-21 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 8.95e-21 2pbxA 203 9.27e-21 2f07A 197 1.19e-20 1rktA 205 1.24e-20 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 1.43e-20 a.4.1.9,a.121.1.1 125194,125195 2uxuA 210 2.32e-20 3bruA 222 2.42e-20 3bcgA 215 2.84e-20 2ibdA 204 2.88e-20 1z77A 200 3.31e-20 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 3.44e-20 1pb6A 212 3.51e-20 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 4.00e-20 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 4.03e-20 2rasA 212 4.44e-20 3ccyA 203 5.07e-20 2g3bA 208 5.43e-20 a.4.1.9,a.121.1.1 134558,134559 2iekA 200 5.58e-20 2qcoA 210 7.52e-20 3crjA 199 7.61e-20 2i10A 202 7.73e-20 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 1.27e-19 a.4.1.9,a.121.1.1 134269,134270 2qtqA 213 1.61e-19 1t56A 216 1.62e-19 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 1.68e-19 a.4.1.9,a.121.1.1 104602,104603 2fq4A 192 1.89e-19 a.4.1.9,a.121.1.1 133937,133938 2genA 197 2.00e-19 a.4.1.9,a.121.1.1 135062,135063 2hytA 197 2.56e-19 2dg7A 195 3.17e-19 3cjdA 198 3.17e-19 2jj7A 186 3.20e-19 2iaiA 230 3.34e-19 1jt6A 188 3.74e-19 a.4.1.9,a.121.1.1 67247,67248 2zb9A 214 4.00e-19 2nx4A 194 4.74e-19 2of7A 260 5.19e-19 2raeA 207 5.94e-19 3cdlA 203 6.80e-19 1ui5A 215 7.89e-19 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 9.25e-19 a.4.1.9,a.121.1.1 133256,133257 3b81A 203 1.71e-18 3c2bA 221 1.82e-18 2dg8A 193 2.35e-18 2eh3A 179 3.02e-18 2yveA 185 3.28e-18 2hkuA 215 3.42e-18 2q24A 194 4.14e-18 3colA 196 4.47e-18 2np5A 203 5.26e-18 a.4.1.9,a.121.1.1 138424,138425 1sgmA 191 8.46e-18 a.4.1.9,a.121.1.1 105537,105538 2o7tA 199 1.07e-17 3bjbA 207 1.17e-17 2qibA 231 1.50e-17 2o7oA 207 1.75e-17 a.4.1.9,a.121.1.1 138930,138931 2guhA 214 1.86e-17 2iu5A 195 2.30e-17 2fd5A 180 2.45e-17 a.4.1.9,a.121.1.1 133291,133292 2d6yA 202 3.08e-17 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 3.20e-17 a.4.1.9,a.121.1.1 119861,119862 3bqyA 209 3.30e-17 3bniA 229 4.27e-17 2rekA 199 4.90e-17 2vprA 207 6.30e-17 1t33A 224 6.56e-17 a.4.1.9,a.121.1.1 106295,106296 1a6i 217 6.86e-17 1zk8A 183 1.03e-16 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 1.88e-16 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 1.95e-16 2oi8A 216 5.43e-16 2qkoA 215 5.70e-16 2zcmA 192 1.11e-15 1z0xA 220 2.62e-15 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 5.16e-15 2g7lA 243 7.36e-15 a.4.1.9,a.121.1.1 134734,134735 2optA 234 1.57e-14 2tct 207 4.68e-14 2hxoA 237 5.30e-14 2id3A 225 1.33e-13 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 9.82e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 0.6789 a.4.5.24,a.76.1.1 132413,132414 1on2A 142 1.123 a.4.5.24,a.76.1.1 87103,87104 1c0wA 225 1.886 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dt5A 211 1.952 a.4.5.38,c.2.1.12 131708,131709 2oxoA 103 1.964 2jn6A 97 2.355 2pg4A 95 2.490 2bnmA 198 2.643 a.35.1.3,b.82.1.10 128835,128836 1xcbA 211 3.170 a.4.5.38,c.2.1.12 109552,109553 6paxA 133 3.817 a.4.1.5,a.4.1.5 64758,64759 1lccA 51 4.637 a.35.1.5 17110 1hlvA 131 5.518 a.4.1.7,a.4.1.7 65854,65855 1pdnC 128 5.648 a.4.1.5 16047 1jkoC 52 6.135 a.4.1.2 66809 2pjpA 121 6.401 2bjcA 62 8.032 a.35.1.5 128620 1cjgA 62 9.081 a.35.1.5 17112 1gulA 222 9.687 a.45.1.1,c.47.1.5 17675,32969 1f3aA 222 10.90 a.45.1.1,c.47.1.5 17701,32995 3bbyA 215 11.26 2ig3A 127 11.45 1vf1A 229 13.06 1gwcA 230 13.13 a.45.1.1,c.47.1.5 70660,70661 1fseA 74 13.31 a.4.6.2 60000 1k3yA 221 13.82 a.45.1.1,c.47.1.5 77245,77246 2qq9A 226 13.97 3b7hA 78 14.36 1zljA 78 15.18 1neqA 74 17.30 a.35.1.2 17063 2blfA 373 17.49 3bs3A 76 17.64 1bi0 226 18.03 1a5t 334 18.13 1s7oA 113 19.46 a.4.13.3 105354 1wpkA 146 19.71 3bzcA 785 20.03 1tadA 324 20.31 a.66.1.1,c.37.1.8 18194,32077 1gseA 221 20.52 a.45.1.1,c.47.1.5 17667,32961 2cdnA 201 20.67 c.37.1.1 130289 1b1bA 140 20.79 a.4.5.24,a.76.1.1 16215,18421 1je8A 82 24.37 a.4.6.2 77108 1ho8A 480 24.73 a.118.1.9 61107 1pveA 72 25.35 a.189.1.1 104322 1wsuA 124 26.67 a.4.5.35,a.4.5.35 121245,121246 1oqyA 368 27.03 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2hpkA 208 27.47 1p4wA 99 28.81 a.4.6.2 87783 1oe8A 211 29.96 a.45.1.1,c.47.1.5 86905,86906 1w07A 659 30.88 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1oktA 211 32.31 a.45.1.1,c.47.1.5 93272,93273 1utxA 66 32.45 a.35.1.3 108034 1ret 43 32.60 1hg5A 289 32.78 a.7.8.2,a.118.9.3 90360,90361 1efaA 333 33.16 a.35.1.5,c.93.1.1 17106,35691 1bl0A 129 33.22 a.4.1.8,a.4.1.8 16053,16054 1yn9A 169 33.46 1lea 84 34.34 1u8bA 133 34.71 1b48A 221 35.33 a.45.1.1,c.47.1.5 17703,32997 2dtrA 226 36.23 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2cro 71 38.06 1fx7A 230 39.05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1y9qA 192 39.11 a.35.1.8,b.82.1.15 116592,116593 2croA 71 39.79 a.35.1.2 17038 1jj2U 70 40.80 a.2.2.1 63106 2auwA 170 40.94 a.35.1.10,d.331.1.1 127339,127340 2ictA 94 41.09 1m0uA 249 41.17 a.45.1.1,c.47.1.5 78359,78360 2h09A 155 41.65 2j3tD 219 42.53 1rzsA 61 42.76 a.35.1.2 105139 1sedA 117 43.59 a.219.1.1 105449 2a9dA 372 43.84 b.1.18.6,d.176.1.1 126431,126432 2fbkA 181 44.09 a.4.5.28 133247 1rp3A 239 45.31 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1k3kA 158 45.76 f.1.4.1 72017 1oyiA 82 46.91 a.4.5.19 93729 2q7wA 396 47.62 2gsqA 202 48.28 a.45.1.1,c.47.1.5 17715,33009 1y0uA 96 48.52 a.4.5.5 116310 1k0dA 260 49.23 a.45.1.1,c.47.1.5 67930,67931 1vz0A 230 50.80 a.4.14.1,d.268.1.1 108929,108930 2dqbA 376 51.07 1zr5A 214 54.85 c.50.1.2 125525 1f5tA 121 55.53 a.4.5.24,a.76.1.1 16203,18409 2ivmA 150 56.83 1sfxA 109 57.06 a.4.5.50 105505 2scpA 174 58.75 a.39.1.5 17256 1vpwA 340 60.99 a.35.1.5,c.93.1.1 17087,35680 1b0nA 111 62.58 a.34.1.1,a.35.1.3 17001,17064 1r69A 69 62.58 a.35.1.2 17028 1jftA 340 63.06 a.35.1.5,c.93.1.1 66652,66653 1ehiA 377 64.44 c.30.1.2,d.142.1.1 31716,41484 2q7eA 291 65.37 2f6rA 281 65.71 2vd8A 391 69.16 1nfp 228 70.06 1rcsA 105 70.51 a.4.12.1 19025 1g73A 162 72.65 a.7.4.1 16332 2r1jL 68 73.66 3c8yA 574 75.59 1vfsA 386 77.10 b.49.2.2,c.1.6.1 108584,108585 2zcwA 202 78.65 1ib2A 349 79.81 a.118.1.8 62141 2b5aA 77 82.75 a.35.1.3 127882 1g6wA 261 83.35 a.45.1.1,c.47.1.5 17751,33045 1qpzA 340 84.14 a.35.1.5,c.93.1.1 17097,35673 1adrA 76 84.81 a.35.1.2 17042 1iyhA 198 86.02 a.45.1.1,c.47.1.5 83790,83791 2ebyA 113 86.66 1wa5B 530 86.88 a.118.1.1 114432 1pgtA 210 88.24 a.45.1.1,c.47.1.5 17515,32809 1t8sA 484 89.21 c.56.2.1 106679