# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 9.81e-22 3bhqA 211 1.12e-21 1vi0A 206 1.14e-21 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 1.75e-21 2id6A 202 1.76e-21 1zkgA 212 2.21e-21 a.4.1.9,a.121.1.1 125194,125195 1rktA 205 2.75e-21 a.4.1.9,a.121.1.1 97623,97624 2ibdA 204 3.48e-21 3bruA 222 3.55e-21 3bcgA 215 4.80e-21 2g7sA 194 4.87e-21 a.4.1.9,a.121.1.1 134737,134738 2uxuA 210 4.96e-21 2rasA 212 5.42e-21 3cwrA 208 6.14e-21 1pb6A 212 6.93e-21 a.4.1.9,a.121.1.1 88017,88018 2hyjA 200 6.93e-21 1z77A 200 8.31e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 8.97e-21 2iekA 200 9.73e-21 2g3bA 208 1.25e-20 a.4.1.9,a.121.1.1 134558,134559 2i10A 202 1.56e-20 a.4.1.9,a.121.1.1 136960,136961 3crjA 199 1.79e-20 2qtqA 213 2.35e-20 2qcoA 210 2.36e-20 1t56A 216 2.94e-20 a.4.1.9,a.121.1.1 106428,106429 2fq4A 192 3.55e-20 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 3.67e-20 a.4.1.9,a.121.1.1 104602,104603 2genA 197 3.73e-20 a.4.1.9,a.121.1.1 135062,135063 2fx0A 201 4.36e-20 a.4.1.9,a.121.1.1 134269,134270 2dg7A 195 4.69e-20 2iaiA 230 6.22e-20 2hytA 197 6.39e-20 3cjdA 198 6.45e-20 1jt6A 188 6.64e-20 a.4.1.9,a.121.1.1 67247,67248 2jj7A 186 7.42e-20 2raeA 207 1.23e-19 2of7A 260 1.29e-19 2zb9A 214 1.30e-19 2nx4A 194 1.30e-19 1ui5A 215 1.40e-19 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 1.78e-19 a.4.1.9,a.121.1.1 133256,133257 3cdlA 203 2.23e-19 2yveA 185 2.79e-19 3b81A 203 3.13e-19 3c2bA 221 3.73e-19 2dg8A 193 4.59e-19 2eh3A 179 8.58e-19 3colA 196 8.92e-19 2q24A 194 9.19e-19 2hkuA 215 9.23e-19 2np5A 203 9.76e-19 a.4.1.9,a.121.1.1 138424,138425 2o7tA 199 1.45e-18 2qibA 231 1.59e-18 1sgmA 191 2.21e-18 a.4.1.9,a.121.1.1 105537,105538 3bjbA 207 2.37e-18 2iu5A 195 2.53e-18 2o7oA 207 2.53e-18 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 5.75e-18 2guhA 214 6.91e-18 2d6yA 202 7.43e-18 a.4.1.9,a.121.1.1 131313,131314 2rekA 199 7.78e-18 1v7bA 185 7.82e-18 a.4.1.9,a.121.1.1 119861,119862 3bniA 229 8.17e-18 2fd5A 180 8.59e-18 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 1.49e-17 1a6i 217 1.50e-17 1t33A 224 2.16e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.73e-17 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 3.56e-17 2gfnA 209 7.16e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 9.19e-17 2qkoA 215 1.68e-16 2zcmA 192 2.74e-16 1z0xA 220 4.32e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.44e-15 2g7lA 243 2.58e-15 a.4.1.9,a.121.1.1 134734,134735 2optA 234 8.23e-15 2tct 207 1.13e-14 2hxoA 237 1.97e-14 2id3A 225 6.88e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 3.66e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 0.5958 a.4.5.24,a.76.1.1 132413,132414 1on2A 142 1.190 a.4.5.24,a.76.1.1 87103,87104 1pdnC 128 1.206 a.4.1.5 16047 1c0wA 225 1.292 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2oxoA 103 1.609 2jn6A 97 1.615 2pjpA 121 1.813 2dt5A 211 1.817 a.4.5.38,c.2.1.12 131708,131709 6paxA 133 2.440 a.4.1.5,a.4.1.5 64758,64759 2pg4A 95 2.598 2bnmA 198 2.634 a.35.1.3,b.82.1.10 128835,128836 1xcbA 211 3.192 a.4.5.38,c.2.1.12 109552,109553 1lccA 51 4.185 a.35.1.5 17110 1cjgA 62 4.781 a.35.1.5 17112 1hlvA 131 4.868 a.4.1.7,a.4.1.7 65854,65855 2qq9A 226 5.588 2bjcA 62 5.783 a.35.1.5 128620 1bi0 226 6.607 1jkoC 52 8.164 a.4.1.2 66809 1a5t 334 8.768 1neqA 74 9.99 a.35.1.2 17063 1b1bA 140 10.86 a.4.5.24,a.76.1.1 16215,18421 3bbyA 215 11.24 1gulA 222 11.77 a.45.1.1,c.47.1.5 17675,32969 1fseA 74 12.94 a.4.6.2 60000 1tadA 324 13.01 a.66.1.1,c.37.1.8 18194,32077 3b7hA 78 13.41 1zljA 78 13.85 1vf1A 229 15.15 1gwcA 230 15.24 a.45.1.1,c.47.1.5 70660,70661 2dtrA 226 17.07 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1s7oA 113 17.38 a.4.13.3 105354 1p4wA 99 17.42 a.4.6.2 87783 1w07A 659 17.55 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2ig3A 127 17.84 1ho8A 480 18.10 a.118.1.9 61107 1wpkA 146 18.59 1ret 43 19.48 3bs3A 76 20.42 1je8A 82 22.25 a.4.6.2 77108 2hpkA 208 23.77 2blfA 373 24.39 1u8bA 133 25.50 1gseA 221 26.26 a.45.1.1,c.47.1.5 17667,32961 1wsuA 124 28.40 a.4.5.35,a.4.5.35 121245,121246 2dtr 226 28.82 1fx7A 230 28.82 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1f3aA 222 29.99 a.45.1.1,c.47.1.5 17701,32995 1hg5A 289 30.43 a.7.8.2,a.118.9.3 90360,90361 2cro 71 31.53 2zcwA 202 31.95 3bzcA 785 32.26 1oe8A 211 32.85 a.45.1.1,c.47.1.5 86905,86906 1vz0A 230 33.32 a.4.14.1,d.268.1.1 108929,108930 1y9qA 192 33.37 a.35.1.8,b.82.1.15 116592,116593 2croA 71 34.51 a.35.1.2 17038 1k3yA 221 34.77 a.45.1.1,c.47.1.5 77245,77246 1lea 84 34.97 1utxA 66 35.02 a.35.1.3 108034 1bl0A 129 36.16 a.4.1.8,a.4.1.8 16053,16054 1hcrA 52 37.80 a.4.1.2 16020 2cdnA 201 37.84 c.37.1.1 130289 1m0uA 249 41.83 a.45.1.1,c.47.1.5 78359,78360 2ictA 94 43.13 2cohA 202 43.21 a.4.5.4,b.82.3.2 130677,130678 2h09A 155 43.28 2auwA 170 43.32 a.35.1.10,d.331.1.1 127339,127340 1k0dA 260 43.75 a.45.1.1,c.47.1.5 67930,67931 2fbkA 181 46.37 a.4.5.28 133247 1y0uA 96 46.42 a.4.5.5 116310 1rzsA 61 47.67 a.35.1.2 105139 1r69A 69 48.81 a.35.1.2 17028 1k3kA 158 50.52 f.1.4.1 72017 1g73A 162 50.59 a.7.4.1 16332 1iyhA 198 50.61 a.45.1.1,c.47.1.5 83790,83791 1f5tA 121 51.45 a.4.5.24,a.76.1.1 16203,18409 2r1jL 68 52.41 1yn9A 169 53.96 3co8A 380 54.27 2a9dA 372 55.10 b.1.18.6,d.176.1.1 126431,126432 1adrA 76 55.30 a.35.1.2 17042 2ivmA 150 57.53 1efaA 333 57.62 a.35.1.5,c.93.1.1 17106,35691 1b0nA 111 57.69 a.34.1.1,a.35.1.3 17001,17064 1rp3A 239 57.75 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1pveA 72 58.93 a.189.1.1 104322 1jj2U 70 60.93 a.2.2.1 63106 1oyiA 82 61.05 a.4.5.19 93729 1resA 43 61.16 a.4.1.2 16023 1sfxA 109 61.24 a.4.5.50 105505 2scpA 174 61.55 a.39.1.5 17256 1mc3A 296 61.71 c.68.1.6 78943 1ft9A 222 62.72 a.4.5.4,b.82.3.1 16107,28131 1oktA 211 63.17 a.45.1.1,c.47.1.5 93272,93273 3c6gA 479 63.30 1vfsA 386 65.29 b.49.2.2,c.1.6.1 108584,108585 1fewA 184 66.04 a.7.4.1 16334 2ebyA 113 67.02 1g6wA 261 68.87 a.45.1.1,c.47.1.5 17751,33045 1a0eA 443 71.46 c.1.15.3 29537 1jftA 340 71.80 a.35.1.5,c.93.1.1 66652,66653 1oqyA 368 72.82 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2aelA 374 73.48 1ehiA 377 77.22 c.30.1.2,d.142.1.1 31716,41484 2vd8A 391 80.52 1qpzA 340 81.14 a.35.1.5,c.93.1.1 17097,35673 1s69A 124 84.18 a.1.1.1 105305 1vpwA 340 84.33 a.35.1.5,c.93.1.1 17087,35680 2q88A 257 84.73