# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 1.46e-23 2f07A 197 3.13e-23 3bcgA 215 3.41e-23 2uxuA 210 3.57e-23 1vi0A 206 6.31e-23 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 6.95e-23 2pbxA 203 9.43e-23 3bruA 222 9.79e-23 1rktA 205 1.08e-22 a.4.1.9,a.121.1.1 97623,97624 3cwrA 208 1.35e-22 1zkgA 212 1.80e-22 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 2.02e-22 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 2.67e-22 a.4.1.9,a.121.1.1 124588,124589 2g7sA 194 3.41e-22 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 4.29e-22 2hyjA 200 4.56e-22 2rasA 212 7.62e-22 2fq4A 192 8.73e-22 a.4.1.9,a.121.1.1 133937,133938 3crjA 199 9.07e-22 2iekA 200 9.49e-22 3ccyA 203 1.06e-21 2qcoA 210 1.09e-21 2jj7A 186 1.60e-21 2hytA 197 1.74e-21 1t56A 216 1.92e-21 a.4.1.9,a.121.1.1 106428,106429 2dg7A 195 2.25e-21 2g3bA 208 2.36e-21 a.4.1.9,a.121.1.1 134558,134559 2i10A 202 2.37e-21 a.4.1.9,a.121.1.1 136960,136961 2qtqA 213 3.19e-21 2fx0A 201 4.41e-21 a.4.1.9,a.121.1.1 134269,134270 2of7A 260 4.50e-21 2raeA 207 5.15e-21 2genA 197 5.96e-21 a.4.1.9,a.121.1.1 135062,135063 2fbqA 235 7.40e-21 a.4.1.9,a.121.1.1 133256,133257 3cjdA 198 8.52e-21 2nx4A 194 9.57e-21 1qvtA 194 9.63e-21 a.4.1.9,a.121.1.1 104602,104603 1ui5A 215 1.00e-20 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 1.10e-20 2zb9A 214 1.11e-20 2iaiA 230 1.18e-20 1jt6A 188 3.31e-20 a.4.1.9,a.121.1.1 67247,67248 3colA 196 3.95e-20 3b81A 203 5.52e-20 2np5A 203 5.91e-20 a.4.1.9,a.121.1.1 138424,138425 3c2bA 221 6.73e-20 2guhA 214 1.52e-19 2qibA 231 1.75e-19 3bjbA 207 2.60e-19 2yveA 185 2.79e-19 2d6yA 202 5.00e-19 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 5.55e-19 1sgmA 191 9.24e-19 a.4.1.9,a.121.1.1 105537,105538 2eh3A 179 1.02e-18 2fd5A 180 1.24e-18 a.4.1.9,a.121.1.1 133291,133292 2qwtA 196 2.43e-18 2o7tA 199 2.67e-18 2dg8A 193 2.77e-18 2hkuA 215 3.27e-18 1a6i 217 3.80e-18 1t33A 224 4.61e-18 a.4.1.9,a.121.1.1 106295,106296 1v7bA 185 4.75e-18 a.4.1.9,a.121.1.1 119861,119862 2gfnA 209 6.70e-18 a.4.1.9,a.121.1.1 135101,135102 2rekA 199 6.89e-18 2o7oA 207 1.38e-17 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 1.47e-17 1zk8A 183 1.72e-17 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 2.03e-17 2iu5A 195 2.90e-17 2vprA 207 3.88e-17 2oi8A 216 6.58e-17 1z0xA 220 8.33e-17 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 4.04e-16 2zcmA 192 8.33e-16 2tct 207 2.52e-15 2id3A 225 3.33e-15 a.4.1.9,a.121.1.1 137261,137262 2g7lA 243 3.90e-15 a.4.1.9,a.121.1.1 134734,134735 2oerA 214 8.39e-15 2optA 234 1.23e-14 2hxoA 237 1.15e-13 2g7gA 213 1.35e-09 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.921 1gwcA 230 5.600 a.45.1.1,c.47.1.5 70660,70661 1bupA 386 6.068 c.55.1.1,c.55.1.1 33377,33378 1ho8A 480 9.878 a.118.1.9 61107 1ft9A 222 17.67 a.4.5.4,b.82.3.1 16107,28131 1ba1 386 19.96 2f6hX 419 20.89 2napA 723 21.24 b.52.2.2,c.81.1.1 26926,35334 1qnrA 344 23.13 c.1.8.3 28834 2obnA 349 25.64 2hpkA 208 28.04 2h6bA 250 30.64 1fj2A 232 30.99 c.69.1.14 34720 1hg5A 289 33.77 a.7.8.2,a.118.9.3 90360,90361 2gsoA 393 34.80 2scpA 174 35.65 a.39.1.5 17256 1kay 381 36.28 1i5pA 633 38.01 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2o2yA 349 38.48 c.2.1.2 138894 1m0uA 249 43.16 a.45.1.1,c.47.1.5 78359,78360 2osxA 481 44.34 2bvyA 475 46.68 b.1.18.2,c.1.8.3 129301,129302 1vf1A 229 46.75 1p5tA 127 47.16 b.55.1.2 94148 1gulA 222 52.87 a.45.1.1,c.47.1.5 17675,32969 1qynA 153 55.91 d.33.1.1 96597 3bbyA 215 57.75 1pgtA 210 58.75 a.45.1.1,c.47.1.5 17515,32809 2gsqA 202 59.72 a.45.1.1,c.47.1.5 17715,33009 2b20A 403 61.50 b.1.18.20,c.69.1.2 127685,127686 1cpt 412 61.83 1k8kA 418 61.85 c.55.1.1,c.55.1.1 68305,68306 2fmyA 220 62.15 1tfr 305 62.65 2qxlA 658 63.68 1ceoA 343 64.24 c.1.8.3 28808 1oqyA 368 64.85 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2vl6A 268 66.20 1l8fA 207 66.30 b.52.1.1 84537 2zcwA 202 69.06 1apyA 162 69.31 d.153.1.5 42004 1t9mA 214 71.33 b.45.1.1 112364 1glqA 209 75.17 a.45.1.1,c.47.1.5 17588,32882 2ivnA 330 75.34 1pdnC 128 75.66 a.4.1.5 16047 2imiA 221 77.00 1gseA 221 79.05 a.45.1.1,c.47.1.5 17667,32961 1m40A 263 79.18 e.3.1.1 74437 1hd5A 213 79.97 b.52.1.1 26896 2dt5A 211 81.34 a.4.5.38,c.2.1.12 131708,131709 1fx3A 169 81.36 d.33.1.1 38524 2cohA 202 83.14 a.4.5.4,b.82.3.2 130677,130678 1k2xA 177 85.02 d.153.1.5 90929 1ppjD 241 87.65 a.3.1.3,f.23.11.1 104258,104259 1kb9D 246 89.07 a.3.1.3,f.23.11.1 77317,77318